View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12941_high_4 (Length: 352)

Name: NF12941_high_4
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12941_high_4
NF12941_high_4
[»] chr6 (2 HSPs)
chr6 (13-333)||(10116873-10117197)
chr6 (27-101)||(32296309-32296383)
[»] chr8 (2 HSPs)
chr8 (27-85)||(23490119-23490177)
chr8 (46-100)||(45191712-45191766)
[»] chr5 (2 HSPs)
chr5 (27-81)||(22927216-22927270)
chr5 (27-80)||(16341564-16341619)
[»] chr7 (2 HSPs)
chr7 (27-100)||(25636054-25636127)
chr7 (34-182)||(47363861-47364014)
[»] chr4 (1 HSPs)
chr4 (27-80)||(28146949-28147002)
[»] chr1 (2 HSPs)
chr1 (27-84)||(34664741-34664798)
chr1 (27-79)||(32617719-32617771)
[»] chr2 (4 HSPs)
chr2 (27-78)||(5428609-5428660)
chr2 (31-85)||(37794805-37794859)
chr2 (107-152)||(5428507-5428552)
chr2 (107-151)||(19263638-19263682)
[»] chr3 (1 HSPs)
chr3 (33-99)||(7299054-7299120)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 10117197 - 10116873
Alignment:
Q  13 aatataattttcaattcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaacagggtttgattt 112  Q
    ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||    
T  10117197 aatatgattttcaattcatctatctcaattggaaaaatatccggattctgtgtctattgtcatgaacgacattttttgcggccttaacagtgtttgattt 10117098  T
Q  113 ttgtccacaatgtaaaaacggtaatgtcggctacctatatacctctttgtcgtggccttt--tctcggtaacagactg----nnnnnnnaaaaaccttgg 206  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||             |||||||||    
T  10117097 ttgtccacaatgtaaaaacggtaatgtcggctacc--tatacctctttgtcgtggccttttctctcggtaacagactgtttttttttttttaaaccttgg 10117000  T
Q  207 atgcatgtcgttgaaaaagaataatgtgattcattgtattctttattttagagaatttcaccctaatttttaatactcttttttaaaaataatgtagatt 306  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10116999 atgcatgtcgttgaaaaagaataatgtgattcattgtattatttattttagagaatttcactttaatttttaatactcttttttaaaaataatgtagatt 10116900  T
Q  307 tatcatcagccctgtgactttcctaca 333  Q
    ||||||||||||||||| |||||||||    
T  10116899 tatcatcagccctgtgagtttcctaca 10116873  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 32296383 - 32296309
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaaca 101  Q
    |||||||||||||||||  ||||||| |  ||| |||||||||||||||||||  |||| |||||||||||||||    
T  32296383 ttcatctatctcaattgaaaaaatattcagattttgtgtctattgtcatgaaccgcattttttgtggccgtaaca 32296309  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 23490119 - 23490177
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacatt 85  Q
    |||||||||||||||||  |||||||||| || || |||||||||||||||||| ||||    
T  23490119 ttcatctatctcaattgaaaaaatatccggatgctatgtctattgtcatgaacggcatt 23490177  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 45191712 - 45191766
Alignment:
Q  46 aaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaac 100  Q
    |||||||| ||||| |||||| |||||||||||||||||| || | |||||||||    
T  45191712 aaaatatctgaattttgtgtccattgtcatgaacgacatttttggcggccgtaac 45191766  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 22927216 - 22927270
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacga 81  Q
    |||||||||||||||||  |||||||||| ||| | |||||||||||||||||||    
T  22927216 ttcatctatctcaattgaaaaaatatccggattttatgtctattgtcatgaacga 22927270  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 16341564 - 16341619
Alignment:
Q  27 ttcatctatctcaattgggaaaa--tatccgaattctgtgtctattgtcatgaacg 80  Q
    |||||||||||||||||  ||||  |||||| ||||| ||||||||||||||||||    
T  16341564 ttcatctatctcaattgaaaaaaaatatccggattctatgtctattgtcatgaacg 16341619  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 25636054 - 25636127
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaac 100  Q
    ||||||||| |||||||  |||||| ||| ||| ||||| ||||||||||||||||||| |||  |||||||||    
T  25636054 ttcatctatttcaattgaaaaaatacccggattatgtgtttattgtcatgaacgacattttttacggccgtaac 25636127  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 47363861 - 47364014
Alignment:
Q  34 atctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgac-attctttgtggccgtaacagggtt------tgatttttgtccacaatgta 126  Q
    ||||||||||  |||||||||| ||||| |||||||||||||||||| | ||| |||| || |||| | | |||      ||||||||||||||  | ||    
T  47363861 atctcaattgaaaaaatatccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttcgtcgtgatttttgtccactttata 47363960  T
Q  127 aaaacggtaatgtcggctacctatatacctctttgtcgtggcc-ttttctcggtaac 182  Q
    |||||||||| ||| ||||||||||   || ||||| |||||| |||||||||||||    
T  47363961 aaaacggtaacgtccgctacctata---ctttttgtggtggcctttttctcggtaac 47364014  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 28147002 - 28146949
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacg 80  Q
    |||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  28147002 ttcatctatctcaattgaaaaaatatccagattctatgtctattgtcatgaacg 28146949  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 34664798 - 34664741
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacat 84  Q
    |||||||||||||||||  | ||||||| | |||| ||||||||||||||||||||||    
T  34664798 ttcatctatctcaattgaaacaatatccaatttctatgtctattgtcatgaacgacat 34664741  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 32617719 - 32617771
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaac 79  Q
    |||||||||||||||||  |||||| ||| ||||| |||||||||||||||||    
T  32617719 ttcatctatctcaattgaaaaaatacccggattctatgtctattgtcatgaac 32617771  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 5428660 - 5428609
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaa 78  Q
    |||||||||||||||||  | ||||||| |||| ||||||||||||||||||    
T  5428660 ttcatctatctcaattgaaataatatccaaattttgtgtctattgtcatgaa 5428609  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 37794805 - 37794859
Alignment:
Q  31 tctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacatt 85  Q
    |||||||||||||  |||||||||  ||||| ||||| |||||||||||||||||    
T  37794805 tctatctcaattgaaaaaatatccagattctatgtcttttgtcatgaacgacatt 37794859  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 5428552 - 5428507
Alignment:
Q  107 tgatttttgtccacaatgtaaaaacggtaatgtcggctacctatat 152  Q
    |||||||||| |||  |||||||||||||| |||||||||||||||    
T  5428552 tgatttttgttcactctgtaaaaacggtaacgtcggctacctatat 5428507  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 19263682 - 19263638
Alignment:
Q  107 tgatttttgtccacaatgtaaaaacggtaatgtcggctacctata 151  Q
    |||||||||| |||| |||||||| ||||| ||||||||||||||    
T  19263682 tgatttttgttcacattgtaaaaatggtaacgtcggctacctata 19263638  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 7299120 - 7299054
Alignment:
Q  33 tatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaa 99  Q
    |||||||||||  |||||||||| ||| ||| |||| ||||||||||| |||| |||| ||||||||    
T  7299120 tatctcaattgaaaaaatatccggattttgtctctagtgtcatgaacggcattttttgcggccgtaa 7299054  T

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