View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_high_8 (Length: 279)
Name: NF12941_high_8
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1734442 - 1734693
Alignment:
| Q |
1 |
gtaaaattctagaagttttatgcttgttagtaaaaagtgttattcttagaaaacgtgaggcacattatataatattacagtgatgaatgaccatattcaa |
100 |
Q |
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| T |
1734442 |
gtaaaattctagaaattttatgcttgttagttaaaagtgttattcttagaaaacgtgaggcacattatataatattacagtgat-----------ttcaa |
1734530 |
T |
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| Q |
101 |
tgtgacacatgctgaaccaaatcatatacacaccgagttccatcatattaaagtatcaatactagtaaaatatatcatcagaactccggagttaaacttg |
200 |
Q |
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| T |
1734531 |
tgtgacacatgctgaaccaaatcgtatacacaccgagttccatcatattat-gtatcaatactagtaaaatatatcatcagaactccacagttaaacttg |
1734629 |
T |
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| Q |
201 |
ttggacgaaagtagtacttgaatggatgatcttttgagaagtctttgtattgcacggattttgt |
264 |
Q |
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| T |
1734630 |
ttggacgaaagtagtacttgaatggatgatcttctgagaagtctttgtattgcacggattttgt |
1734693 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 15052322 - 15052402
Alignment:
| Q |
176 |
catcagaactccggagttaaacttgtt-ggacgaaagtagtacttgaatggatgatcttttgagaagtctttgtattgcac |
255 |
Q |
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| T |
15052322 |
catcagaactctgcagttaaacgtgtttggacgaaaatggtactagaatggatgatctcatgagaagttcttgtgttgcac |
15052402 |
T |
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