View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_low_1 (Length: 573)
Name: NF12941_low_1
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Original strand, 47343956 - 47344507
Alignment:
| Q |
17 |
tggaacacacttcgaaaacccgcgcttgccgcgatattaataggaattctattgatgtacaatccaaacacgtccttagcagcatctggaggtagaattg |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47343956 |
tggaacacacttcgaaaacccgcgtttgccgcgatattaataggaattctattgatgtacaatccaaacacgtccttagcagcatctggaggtagaattg |
47344055 |
T |
|
| Q |
117 |
gaggaagatcattctcttcatcttcgtcttcctcttcatcgtctaggagttattcggttccatcaccgagtccagggttttcttactctgctccttatta |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47344056 |
gaggaagatcattctcttcttcttcgtcttcctcttcatcgtctaggagttattcggttccatcaccgagtccagggttttcttactctgctccttatta |
47344155 |
T |
|
| Q |
217 |
tgggccttctccgtttagcggcggggtttactttgggcctgccgttggtgttggagttggtgctgggtcaagtttatttctcatcttagcaggtttcgct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47344156 |
cgggccttctccgtttagcggcggggtttactttgggcctgccgttggtgttggagttggtgctgggtcaagtttatttctcatcttagcaggtttcgct |
47344255 |
T |
|
| Q |
317 |
gcttttattttggtttctggttttctttctgatcgtgatgagggtagtgttcttactgctgctgctggaaaaaccaccgtactcaagcttcaggtaattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47344256 |
gcttttattttggtttctggttttctttctgatcgtgatgagggtagtgttcttactgctgctgctggaaaaaccaccgtactcaagcttcaggtaattt |
47344355 |
T |
|
| Q |
417 |
agttattattactccctctgtcgcaacataactgacttagttgatcaatttatgcagattaagnnnnnnnnntgtatgcatagatgaaagagagaatcat |
516 |
Q |
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| T |
47344356 |
agttattattactccctctgtcgcaacataactgacttagttgatcaatttatgcagattaag-aaaaaaaatgtatgcatagatgaaagagagaatcat |
47344454 |
T |
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| Q |
517 |
acttttaatgtaaagagtatccatcataatcataaatgtaatgcaaatagtat |
569 |
Q |
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| T |
47344455 |
acttttaatgtaaagagtttccatcataatcataaatgtaatgcaaatagtat |
47344507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 345 - 479
Target Start/End: Complemental strand, 23096366 - 23096233
Alignment:
| Q |
345 |
ctgatcgtgatgagggtagtgttcttactgctgctgctggaaaaaccaccgtactcaagcttcaggtaatttagttatta-ttactccctctgtc-gcaa |
442 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| || ||| |||| |
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| T |
23096366 |
ctgattgtgatgagggtagtgttcttactgctgctg---gaaaaaccaccgtactcaagcttcaggtaatttagttattactccctccatccgtcagcaa |
23096270 |
T |
|
| Q |
443 |
cataactgacttagttgatcaatttatgcagattaag |
479 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
23096269 |
cataactgacttagttgatcaattcatgcagattaag |
23096233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 328 - 425
Target Start/End: Complemental strand, 11827970 - 11827870
Alignment:
| Q |
328 |
ggtttctggttttctttctgatcgtgatgagggtagtgttcttactg---ctgctgctggaaaaaccaccgtactcaagcttcaggtaatttagttatta |
424 |
Q |
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|
||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||| |
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| T |
11827970 |
ggtttctcgttttctttctgatagtgatgagggtagtgttcttactaatactgctgctgtaaaaacaaccgtactcaagcttcaggtaatttacttatta |
11827871 |
T |
|
| Q |
425 |
t |
425 |
Q |
| |
|
| |
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|
| T |
11827870 |
t |
11827870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 23097542 - 23097417
Alignment:
| Q |
17 |
tggaacacacttcgaaaacccgcgcttgccgcgatatta---ataggaattctattgat---gtacaatccaaacacgtccttagcag---catctggag |
107 |
Q |
| |
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|||||||||||||||||||||| | | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||| |
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| T |
23097542 |
tggaacacacttcgaaaacccgtggtagccgcgatattattaataggaattctattgactacgtacaatccaaacacgtccttagcagcaccatccggag |
23097443 |
T |
|
| Q |
108 |
gtagaattggaggaagatcattctct |
133 |
Q |
| |
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||||||| |||||||| |||||||| |
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| T |
23097442 |
gtagaatgggaggaagtgcattctct |
23097417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 1493736 - 1493869
Alignment:
| Q |
137 |
tcttcgtcttcctcttcatcgtctaggagttattcggttccatcaccg---agtccagggttttcttactctgctccttattatgggccttctccgttta |
233 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||| |
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| T |
1493736 |
tcttcgtcttcgtcttcatcgtcctggagttattcggttccatcgccgccgagtccagagttttcttactctgct---------------tctccgttta |
1493820 |
T |
|
| Q |
234 |
gcggcggggtttactttgggcctgccgttggtgttggagttggtgctgg |
282 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||| ||||||||||||| |
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| T |
1493821 |
gcggtggggtttacgttgagcctgccgttggtgttagagttggtgctgg |
1493869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 11828335 - 11828207
Alignment:
| Q |
17 |
tggaacacacttcgaaaacccgcgcttgccgcgatatta---ataggaattct---attgat---gtacaatccaaacacgtccttagcag---catctg |
104 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
11828335 |
tggaacacacttcgaaaacccgcggtagccgcgatattattaataggaattcttctattgactacgtacaatccaaacacgtccttagcagcaccatctg |
11828236 |
T |
|
| Q |
105 |
gaggtagaattggaggaagatcattctct |
133 |
Q |
| |
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|||||||||| |||||||| |||||||| |
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| T |
11828235 |
gaggtagaatgggaggaagtgcattctct |
11828207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 420
Target Start/End: Complemental strand, 11827635 - 11827557
Alignment:
| Q |
342 |
tttctgatcgtgatgaggg---tagtgttcttactgctgctgctggaaaaaccaccgtactcaagcttcaggtaatttagtt |
420 |
Q |
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||||||||||||||||||| || ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
11827635 |
tttctgatcgtgatgagggacgtactgttcttactgctgctg---gaataaccactgtactcaagcttcaggtaatttagtt |
11827557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 23097346 - 23097304
Alignment:
| Q |
138 |
cttcgtcttcctcttcatcgtctaggagttattcggttccatc |
180 |
Q |
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| T |
23097346 |
cttcgtcttcgtcttcatcgtcctggagttattcggttccatc |
23097304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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