View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_low_11 (Length: 305)
Name: NF12941_low_11
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 114 - 294
Target Start/End: Complemental strand, 6504882 - 6504703
Alignment:
| Q |
114 |
ttcatattactgtgactccttccttnnnnnnngataacatgtttcccacggattctttttgaagggtgtttcctacaaggtgtgagtttaaaaggtcaac |
213 |
Q |
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| T |
6504882 |
ttcatattactgtgactccttcctaaaaaaaagataacatgttttccacggattcttttttaaggatgtttcctacaaggtgtgagtttaaaaggtcaac |
6504783 |
T |
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| Q |
214 |
aaattccaatttctataatattttatcttccaacacttgtctcattgtgtatatatcatcattaccaccgcaagtgttcat |
294 |
Q |
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| T |
6504782 |
aa-ttccaatttctataatattttatcttccaacacttgtctcattgtgtatatatcatcattaccatcgcaagtgttcat |
6504703 |
T |
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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 6505017 - 6504919
Alignment:
| Q |
14 |
taataataatacatttgtaaccaagtgatttaacccaaatagttaataaattgtcattatgatggatcttatcgaactcgaatcctattagtgtggaaa |
112 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6505017 |
taataataatacatttataaccaagtgatttaactcaaatgattaataaattgtcattatgatggatcttatcaaactcgaatcctattagtgtggaaa |
6504919 |
T |
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