View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_low_12 (Length: 285)
Name: NF12941_low_12
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 27567961 - 27568196
Alignment:
| Q |
33 |
tttgactacatagcgtggccaagactcattttgaatttctcagactttgtcttactcgtttttagaaatttgatagctactgtacaannnnnnnnnnnnt |
132 |
Q |
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| T |
27567961 |
tttgactacatagcgtggccaagactcattttgaatttctcagactttgtcttactcgtttttagaaatttgatagctactgtacaactctctctctctt |
27568060 |
T |
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| Q |
133 |
tctacaattttctcccttaattagggtggttcattcttccaagcaaaaagctacttactcttattactagcttacagaaccatagctaaatataaaaact |
232 |
Q |
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| T |
27568061 |
tctacaattttctcccttaattagggtggttcattcttccaagcaaaaagctacttactcttattactagcttacagaaccatagctaaatataaaaact |
27568160 |
T |
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| Q |
233 |
atttttgctaaggaaattaaccattggaatttgaaa |
268 |
Q |
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| T |
27568161 |
atttttgctaaggaaattaaccattggaatttgaaa |
27568196 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 21349054 - 21349132
Alignment:
| Q |
33 |
tttgactacatagcgtggccaagactcattttgaatttctcagactttgtcttactcgtttttagaaatttgatagcta |
111 |
Q |
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| T |
21349054 |
tttgactacatggcgtggccaagactcattttgaatttcccaggttttatcttactcgttattagaaatttgatagcta |
21349132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 50723542 - 50723464
Alignment:
| Q |
33 |
tttgactacatagcgtggccaagactcattttgaatttctcagactttgtcttactcgtttttagaaatttgatagcta |
111 |
Q |
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| T |
50723542 |
tttgactacatggcgtggccaatactcattttgaatttcccaggttttatcttacttgttattagaaatttgatagcta |
50723464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 50789307 - 50789385
Alignment:
| Q |
33 |
tttgactacatagcgtggccaagactcattttgaatttctcagactttgtcttactcgtttttagaaatttgatagcta |
111 |
Q |
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||||||||||| |||||||||| |||||||||||||||| ||| ||| ||||||| ||| |||||||||||||||||| |
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| T |
50789307 |
tttgactacatggcgtggccaatactcattttgaatttcccaggttttatcttacttgttattagaaatttgatagcta |
50789385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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