View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12941_low_18 (Length: 234)

Name: NF12941_low_18
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12941_low_18
NF12941_low_18
[»] chr5 (3 HSPs)
chr5 (11-218)||(41886394-41886600)
chr5 (92-196)||(41900361-41900465)
chr5 (91-199)||(32268617-32268725)
[»] chr8 (2 HSPs)
chr8 (150-199)||(17635581-17635630)
chr8 (170-199)||(17642880-17642909)
[»] chr6 (3 HSPs)
chr6 (150-199)||(9412203-9412252)
chr6 (157-194)||(11935970-11936007)
chr6 (157-194)||(11947950-11947987)
[»] chr4 (2 HSPs)
chr4 (157-194)||(645194-645231)
chr4 (133-193)||(1545952-1546012)
[»] chr3 (1 HSPs)
chr3 (157-194)||(1657614-1657651)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 41886394 - 41886600
Alignment:
Q  11 catcatcaactgcatcagattctctctcacaatctgctatgatcaaagtcaaaccctcccttttcctcctcgtctactcagtagattcatcaatctcacc 110  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41886394 catcaccaaccgcatcagattctctctcacaatctgctgtgatcaaagtcaa-ccctcccttttcctcctcgtctactcagtagattcatcaatctcacc 41886492  T
Q  111 tctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgtatcaac 210  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886493 tctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgtatcaac 41886592  T
Q  211 gtattatt 218  Q
    ||||||||    
T  41886593 gtattatt 41886600  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 41900361 - 41900465
Alignment:
Q  92 tagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatca 191  Q
    |||||| | |||||||||||| ||| | || ||  |||||  |||||||||||  ||||||||  | ||||||||| |||||||||||||||||||||||    
T  41900361 tagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcacatca 41900460  T
Q  192 ctcaa 196  Q
    |||||    
T  41900461 ctcaa 41900465  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 32268725 - 32268617
Alignment:
Q  91 gtagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatc 190  Q
    ||||||||| ||| |||||||| |||||||| ||  | |||   ||||| ||||  || |||||| | |||||||||  |||||||||||||||||| ||    
T  32268725 gtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtc 32268626  T
Q  191 actcaatct 199  Q
    |||||||||    
T  32268625 actcaatct 32268617  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 17635581 - 17635630
Alignment:
Q  150 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 199  Q
    |||||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatct 17635630  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 17642880 - 17642909
Alignment:
Q  170 ttttccattgaaactcacatcactcaatct 199  Q
    ||||||||||||||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatct 17642909  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 9412252 - 9412203
Alignment:
Q  150 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 199  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 9412203  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 11935970 - 11936007
Alignment:
Q  157 gccaaatctctaattttccattgaaactcacatcactc 194  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11935970 gccaaatctctagttttccattgagactcacatcactc 11936007  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 11947950 - 11947987
Alignment:
Q  157 gccaaatctctaattttccattgaaactcacatcactc 194  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11947950 gccaaatctctagttttccattgagactcacatcactc 11947987  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 645231 - 645194
Alignment:
Q  157 gccaaatctctaattttccattgaaactcacatcactc 194  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  645231 gccaaatctctagttttccattgagactcacatcactc 645194  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 1546012 - 1545952
Alignment:
Q  133 gtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcact 193  Q
    ||||| ||||||  || ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  1546012 gtggtgacctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 1657651 - 1657614
Alignment:
Q  157 gccaaatctctaattttccattgaaactcacatcactc 194  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1657651 gccaaatctctagttttccattgagactcacatcactc 1657614  T

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