View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_low_3 (Length: 427)
Name: NF12941_low_3
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 8846035 - 8846394
Alignment:
| Q |
12 |
atgaaaggagcaattttggaaggaggcgtaccattcaatagggtttatggcatgcatgcatttgaatacacacttacagatccaaggttcaatgatgttt |
111 |
Q |
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| T |
8846035 |
atgaaaggtgcaattatggaaggaggcataccattcaatagggtttatggcatgcatgcatttgaatatccaattgtggatccaaggtttaatgatgttt |
8846134 |
T |
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| Q |
112 |
tcaacaatgctatggtcaattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtgg |
211 |
Q |
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| T |
8846135 |
tcaacaatgctatggccaattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtgg |
8846234 |
T |
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| Q |
212 |
tggtcttgggatcaatctcaagctaattacttctaaatatcctcaaatacatggtgtcaattttgacttgcctcacgtcctagaacatgcacctacctat |
311 |
Q |
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| T |
8846235 |
tggtcttgggatcaatcttaagctaattacttctaaatatcctcatatacatggtgttaattttgacttgcctcacgtcctagaacatgcaccttcctat |
8846334 |
T |
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| Q |
312 |
gaaggtatatttccattgtcatttaacaaatttgttacaaatagtgttggaaatgaagat |
371 |
Q |
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| T |
8846335 |
gacggtatattttctttaacatttaacaaattggttgcaaatagtgatggaaataaagat |
8846394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 28699379 - 28699288
Alignment:
| Q |
195 |
cttgttgatgttggtggtggtcttgggatcaatctcaagctaattacttctaaatatcctcaaatacatggtgtcaattttgacttgcctca |
286 |
Q |
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| T |
28699379 |
cttgttgatgttggaggtggtcttgggatcaacattaacttgatcacttcaaaacaccctcatatacacggtatcaatttcgacttgcctca |
28699288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 49098776 - 49098490
Alignment:
| Q |
15 |
aaaggagcaattttggaaggaggcgtaccattcaatagggtttatggcatgcatgcatttgaatacacacttacagatccaaggttcaatgatgttttca |
114 |
Q |
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| T |
49098776 |
aaaggagcgatcatggaaggaggaatagcgttcaatagggtttatggaatgcatgcgtttgagtatccacgtgtggacccaaggttcaatgatgttttca |
49098677 |
T |
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| Q |
115 |
acaatgctatggtcaattgtacaactatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtgg |
214 |
Q |
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| T |
49098676 |
acaaagctatggttaattcaacaactataaacatgaagaggattattgattgttatcaaggttttgaccacataactaagctagttgatgttggtggtgg |
49098577 |
T |
|
| Q |
215 |
tcttgggatcaatctcaagctaattacttctaaatatcctcaaatacatggtgtcaattttgacttgcctcacgtcctagaacatgc |
301 |
Q |
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| T |
49098576 |
tcttggaattaacctcaaattaatcacatccaaatattcacatattcagggaattaattttgacttgcctcatgtactacaacatgc |
49098490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 311
Target Start/End: Complemental strand, 49109761 - 49109588
Alignment:
| Q |
138 |
actatagtcatgaagagggttcttgaaatctatgaaggttttgaacacatcaataaacttgttgatgttggtggtggtcttgggatcaatctcaagctaa |
237 |
Q |
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| T |
49109761 |
actatagttatgaacaaggttcttcaatcctacaaaggttttgaagatgtcaagaggcttgtggatgttggtggaggtcttggtgtcaacattaacttaa |
49109662 |
T |
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| Q |
238 |
ttacttctaaatatcctcaaatacatggtgtcaattttgacttgcctcacgtcctagaacatgcacctacctat |
311 |
Q |
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| T |
49109661 |
tcacttcaaaacaccctcatatacatggtatcaatttcgacttgcctcatgtcatacaacatgccccttcctat |
49109588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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