View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_low_4 (Length: 392)
Name: NF12941_low_4
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 55174706 - 55175065
Alignment:
| Q |
18 |
catttgacttaatttccagtccaaaaccagagattttcagataaaattaattgcttagtcctcaatggtagaacatcaatcctgtgctaccttggtcaat |
117 |
Q |
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| T |
55174706 |
catttgacttaatttccagtccaaaaccagagattttcagataaaattaattgcttagtcctcaatggtagaacatcaatcctgtgctaccttggtcaat |
55174805 |
T |
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| Q |
118 |
gcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaacaatgttgctcagatttcagccgagttggaaagggaaaggaagaagaatg |
217 |
Q |
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| T |
55174806 |
gcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaacgatgtttctcagatttcagccgagttggaaagggaaaggaagaagaatg |
55174905 |
T |
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| Q |
218 |
cggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatcttttttatttgtactttgcttaaa |
317 |
Q |
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| T |
55174906 |
cggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatcttttttatttgtactttgcttaaa |
55175005 |
T |
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| Q |
318 |
taagtgttgacttgtttatattcaataaaagctgacatctagagtgaaagaatgacacag |
377 |
Q |
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| T |
55175006 |
taagtgttgacttgtttatattcaataaaagctgacatctagagtgaaagaatgacacag |
55175065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 55178544 - 55178669
Alignment:
| Q |
171 |
tgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaac |
270 |
Q |
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| T |
55178544 |
tgttgctgagatttcattggagttggaaagggaaaggctgaaaaatgcggagctcatggaaaaaatatcaatgcacgaagctcagataagggaaagaaac |
55178643 |
T |
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| Q |
271 |
accgaaactcaagtaacattatcttttt |
298 |
Q |
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| T |
55178644 |
accgaaactc--gtaacattatcttttt |
55178669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 50906734 - 50906856
Alignment:
| Q |
127 |
ttttgtgatatagaacaagaagtgaatggagataat-gtcaacaatgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctc |
225 |
Q |
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| T |
50906734 |
ttttgtgacatagaataagaagcgaatggagataattgtcaacgttgttgctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatc |
50906833 |
T |
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| Q |
226 |
atggaaaaaatatctatgctcgaa |
249 |
Q |
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| T |
50906834 |
atgg-aaaaatatcgatgctcgaa |
50906856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 50906872 - 50906959
Alignment:
| Q |
288 |
attatcttttttatttgtactttgcttaaataagtgttgacttgttt-atattcaataaaagctgacatctagagtgaaagaatgaca |
374 |
Q |
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| T |
50906872 |
attatctttcttattcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgaca |
50906959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 50952792 - 50952849
Alignment:
| Q |
72 |
ttagtcctcaatggtagaacatcaatcctgtgctacc-ttggtcaatgcctctacatt |
128 |
Q |
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| T |
50952792 |
ttagtcctcaatggtagaacatcaatcatgtgctacctttggtcaatgcctctgcatt |
50952849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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