View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12941_low_5 (Length: 367)

Name: NF12941_low_5
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12941_low_5
NF12941_low_5
[»] chr2 (8 HSPs)
chr2 (208-355)||(25557788-25557936)
chr2 (15-118)||(25558449-25558552)
chr2 (121-210)||(25558086-25558173)
chr2 (208-287)||(4865477-4865555)
chr2 (230-308)||(37828446-37828523)
chr2 (251-308)||(4865682-4865739)
chr2 (251-308)||(29667569-29667626)
chr2 (208-279)||(34887855-34887924)
[»] chr7 (8 HSPs)
chr7 (208-308)||(1505543-1505643)
chr7 (220-308)||(23457411-23457499)
chr7 (220-308)||(23533269-23533357)
chr7 (208-308)||(23474929-23475029)
chr7 (242-308)||(23443335-23443401)
chr7 (251-307)||(2169266-2169322)
chr7 (240-308)||(23534133-23534201)
chr7 (260-309)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (208-308)||(17476169-17476268)
chr5 (230-297)||(7148294-7148360)
chr5 (230-308)||(38299728-38299804)
chr5 (233-308)||(38299874-38299953)
chr5 (262-310)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (220-310)||(27630998-27631088)
chr1 (252-310)||(51249165-51249223)
chr1 (220-308)||(42175252-42175340)
[»] chr3 (4 HSPs)
chr3 (208-309)||(30259605-30259706)
chr3 (251-305)||(30259865-30259919)
chr3 (251-299)||(38421258-38421306)
chr3 (222-278)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (211-307)||(34448430-34448526)
chr6 (208-308)||(1706803-1706903)
chr6 (253-310)||(5449483-5449541)
chr6 (252-309)||(4974690-4974747)
[»] chr4 (4 HSPs)
chr4 (208-287)||(53801506-53801585)
chr4 (208-308)||(12828554-12828655)
chr4 (247-308)||(52074897-52074958)
chr4 (220-287)||(26310235-26310300)
[»] chr8 (4 HSPs)
chr8 (251-308)||(13706217-13706274)
chr8 (221-308)||(1410698-1410783)
chr8 (268-308)||(1410470-1410510)
chr8 (229-308)||(29795754-29795833)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 25557936 - 25557788
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattt 306  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  307 tcaatatgagtatatactactcgcattgccatatttgggtcacaggttc 355  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  25557836 ttaatatgagtatatactactcgcattgccatatttgggtcacaggttc 25557788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 25558552 - 25558449
Alignment:
Q  15 acctgtgttgtgaaatagggatttaagagttgtgttttgtttttaacaggttgtgtaatgggcttattgggcttagtttaaaacttttactatcagcctt 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  25558552 acctgtgttgtgaaatagggatttaggagttgtgttttgtttttaacaggttgtgtaatgggcttattaggcttagtttaaaacttttactaccagcctt 25558453  T
Q  115 acat 118  Q
    ||||    
T  25558452 acat 25558449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 25558173 - 25558086
Alignment:
Q  121 taattgctaaaatggatataattttgctcttttttcttaattaaaattacctatttgtgttttaggggatttaattacctatttgttgtt 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25558173 taattgctaaaatggatctaattttgctcttttttcttaattaa--ttacctatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 4865555 - 4865477
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 287  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgtttttt 4865477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  230 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 29667626 - 29667569
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    ||||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||||    
T  29667626 gtatttttgttagtttgtatgggagtgaacgatttttattgggtgaagagcagttttc 29667569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 34887924 - 34887855
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa 279  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaa 34887855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  308 c 308  Q
    |    
T  1505543 c 1505543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||||||| |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  308 c 308  Q
    |    
T  23474929 c 23474929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  242 acgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||| | |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 2169266 - 2169322
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    |||||||| || |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  2169266 gtattttgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 23534133 - 23534201
Alignment:
Q  240 acacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||||| | ||||||| || ||||| |||| |||||| | |||||| ||||||||||| ||||||||    
T  23534133 acacgtggcgggtatttttgttagtttgtatgagagtgagcattttttgttgggagaagagcaattttc 23534201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 25921081 - 25921030
Alignment:
Q  260 tcagtttatatgggagtgaacgtt--ttttattgggagaagaacaattttca 309  Q
    ||||||| ||||||||||||||||  |||| ||||| |||||||||||||||    
T  25921081 tcagtttgtatgggagtgaacgttttttttgttgggtgaagaacaattttca 25921030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 7148360 - 7148294
Alignment:
Q  230 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaa 297  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagc-ttttttgttgggagaa 7148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  230 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||||||| |||| ||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacgtctttt-ttgggagaagagcaattttc 38299728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 38299874 - 38299953
Alignment:
Q  233 agttaacacacgtggggagtattttggtcagttta-----tatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    ||||||| ||||||||  |||||||||||||||||     |||| |||||| |||||||| ||||||||||| ||||||||    
T  38299874 agttaactcacgtgggc-gtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 38299953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 41048694 - 41048646
Alignment:
Q  262 agtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 310  Q
    ||||| ||||||||||  |||||||| ||||||||||| ||||||||||    
T  41048694 agtttgtatgggagtgtgcgttttttgttgggagaagagcaattttcaa 41048646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 310  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  252 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 310  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 42175252 - 42175340
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    ||||||||  |||||||||| ||||||| |  ||||| | || |||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  42175252 cttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttttgttgggagaagagcaattttc 42175340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 30259706 - 30259605
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||||||| ||||| ||||  |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttttgttgggtgaagcgcaatttt 30259607  T
Q  308 ca 309  Q
    ||    
T  30259606 ca 30259605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 30259865 - 30259919
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatt 305  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||    
T  30259865 gtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 38421306 - 38421258
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgttttttattgggagaaga 299  Q
    |||||||| ||||||||||||||||| | |||||||| | |||||||||    
T  38421306 gtattttgatcagtttatatgggagtaagcgttttttgtcgggagaaga 38421258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  222 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 278  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  211 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  ||||||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 307  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| |||||||  |||||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  308 c 308  Q
    |    
T  1706903 c 1706903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  253 attttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttcaa 310  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 4974747 - 4974690
Alignment:
Q  252 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttca 309  Q
    ||||||||||||||| ||||| ||||| |||||||| ||  ||||||| |||||||||    
T  4974747 tattttggtcagtttgtatggaagtgagcgttttttgttaagagaagagcaattttca 4974690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 53801506 - 53801585
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 287  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || |||||||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgtttttt 53801585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 12828554 - 12828655
Alignment:
Q  208 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt-attgggagaagaacaattt 306  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| ||||||  |||||||||||  |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattt 12828653  T
Q  307 tc 308  Q
    ||    
T  12828654 tc 12828655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 52074897 - 52074958
Alignment:
Q  247 gggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    ||||||||||||||| || ||||||| ||||| ||||||||| || ||||||| ||||||||    
T  52074897 gggagtattttggtcggtctatatggaagtgagcgttttttactgagagaagagcaattttc 52074958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 26310300 - 26310235
Alignment:
Q  220 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 287  Q
    ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||||| | ||||||    
T  26310300 cttactgaatgtgagttaattca--tgcggagtattttggtcagtttgtatgggagtgagcatttttt 26310235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  251 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 1410698 - 1410783
Alignment:
Q  221 ttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    ||||||||  ||||||||| ||||||| | |||||||| | ||||||||||| |||||  ||||||| ||||||||||| ||||||||    
T  1410698 ttaccgaacatgagttaactcacgtggag-gtattttgattagtttatatggcagtgagtgtttttt-ttgggagaagagcaattttc 1410783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 1410510 - 1410470
Alignment:
Q  268 tatgggagtgaacgttttttattgggagaagaacaattttc 308  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  1410510 tatggaagtgaacgttttttgttggaagaagaacaattttc 1410470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 29795833 - 29795754
Alignment:
Q  229 tgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttc 308  Q
    ||||||||||| |||| || | |||||||||||||||| |||| |||| |||| |||||| ||| ||||||| ||||||||    
T  29795833 tgtgagttaactcacgcggag-gtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University