View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_16 (Length: 542)
Name: NF12942_high_16
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 45 - 502
Target Start/End: Original strand, 34214741 - 34215200
Alignment:
| Q |
45 |
tatgtgaatctttagttaggcagaccacgccactcacgaaataaatcagtgtagttccaatggtaaagtatccaacaaaatggatccttgaactaaatga |
144 |
Q |
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| T |
34214741 |
tatgtgaatctttagttaggcagaccacgccactcacgaaataaatcagtgtagttccaatggtaaagtatccaacaaaacggatc-ttgaaccaaatga |
34214839 |
T |
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| Q |
145 |
cccatattgactaacctatcagcacaac-------agataccttcgtggtaattattaaaagaaataacttgaacaccggtattatgcc-atctgtttcg |
236 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
34214840 |
cccatattgactaacctgtcagcacaacgcacaacagataccttcgtggtaattattaaaagaaataacttgaacaccggtattatgcccatctatttcg |
34214939 |
T |
|
| Q |
237 |
aagcataattgggactaaagaagcatttctaaaaatcatgagagcactagttgagtcgatttctaacgaaactgttgattcttttttacatcatctctca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34214940 |
aagcataattgggactaaagaagcatttctaaaaatcacgag-----tagttgagtcgatttctaacgaaactgttgattcttttttacatcatctctca |
34215034 |
T |
|
| Q |
337 |
ctcttggaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaatagtagctttaacac |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34215035 |
ctcttggaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaatagtagctttaacac |
34215134 |
T |
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| Q |
437 |
tttttaggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaatgtc |
502 |
Q |
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| T |
34215135 |
tttttaggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaatgtc |
34215200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34214682 - 34214718
Alignment:
| Q |
1 |
agactaaaaccgtcaaaaactggaaataaaagaaaaa |
37 |
Q |
| |
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| T |
34214682 |
agactaaaaccgtcaaaagctggaaataaaagaaaaa |
34214718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 310 - 528
Target Start/End: Original strand, 10637662 - 10637882
Alignment:
| Q |
310 |
gttgattcttttttacatcatctctcactcttggaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagt |
409 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| || |||||||||| ||||| |||||||||||| |||||||| || | | || ||||| |
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| T |
10637662 |
gttggttcttttttatatcatctctcactcttggaagcaacacaagcttgtagaagcgctcagccttttttgcaccgaaattagaagcaaaaatcctagt |
10637761 |
T |
|
| Q |
410 |
ggcttgaaacaatagtagcttt-----aacactttttaggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaatgtctt |
504 |
Q |
| |
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|||||||||||| ||| || | ||||||| |||| ||||| ||||||||||| | ||||||||||||| || |||||||||||||||| ||| |
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| T |
10637762 |
ggcttgaaacaa----agcatttggagaccacttttgaggttcagtaagatataagacctcctcccaattttgcatcgaagggatgtgtttaaatgcctt |
10637857 |
T |
|
| Q |
505 |
gggaatttt-cctactgtatatctg |
528 |
Q |
| |
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||| ||||| ||||||||||||||| |
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| T |
10637858 |
ggggattttgcctactgtatatctg |
10637882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 11214134 - 11213960
Alignment:
| Q |
106 |
ggtaaagtatccaacaaaatggatccttgaactaaatgacccatattgactaacctatcagcacaacagataccttcgtggtaattattaaaagaaataa |
205 |
Q |
| |
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||||||||||| | | ||| |||| ||||||| ||||||||||||||| | ||||| |||||||||||| |||||||| ||||| | ||||||||||||| |
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| T |
11214134 |
ggtaaagtatcaacccaaacggattcttgaacaaaatgacccatattggccaacctctcagcacaacagttaccttcgcggtaaatgttaaaagaaataa |
11214035 |
T |
|
| Q |
206 |
cttgaac---------accggtattatgccatctgtttcgaagcataattgggactaaagaagcatttctaaaaa |
271 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11214034 |
cttgaacaccaatattaccggcattatgccatctgtttcgaagcataattgggactaaagaagcatttcgaaaaa |
11213960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 16043920 - 16043970
Alignment:
| Q |
220 |
ttatgccatctgtttcgaagcataattgggactaaagaagcatttctaaaaa |
271 |
Q |
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| T |
16043920 |
ttatgccatctgtttcgaagcataa-tccgactaaagaagcatttctaaaaa |
16043970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 39970236 - 39970160
Alignment:
| Q |
218 |
tattatgccatctgtttcgaagcataattgggactaaagaagcatttctaaaaatcatgagagcactagttgagtcg |
294 |
Q |
| |
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|||||||| || |||||||||||| || ||||||||||| | ||| |||| ||||| |||||||| ||||||||| |
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| T |
39970236 |
tattatgctatttgtttcgaagcaccatagggactaaagaggagtttttaaatatcattagagcacttgttgagtcg |
39970160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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