View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_18 (Length: 516)
Name: NF12942_high_18
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 5129719 - 5129235
Alignment:
| Q |
1 |
ccatacaataggtagggttatgaaagttcttgttttaggatgcaaatgatgtcttttctttttattgtaaaatttaatctctgttcattagtcattatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
5129719 |
ccatacaataggtagggttatgaaagttcttgttttaggatgaaaatgatgtcttttcttttt-ttgtaaactttaatctctgttcattagtcattatct |
5129621 |
T |
|
| Q |
101 |
atggttttcggagaatgacttgctaccttgttaccttcattaggaaaaacaagacagttctttatcattcagtttcctgatgtcttatatatgcttttct |
200 |
Q |
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||||||||| |||||||||||||||||||||| || | | || | ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5129620 |
atggttttcagagaatgacttgctaccttgttgccg--agtgcttaatgct---cagtt--ttatcattcagtttcctgatgtcttatatatgcttttct |
5129528 |
T |
|
| Q |
201 |
tcatctatcttgtcttcttagtctttatctgctccttgaaaagggtttctgaatcctgagtctgaaatataaccacttatttgaggagctttgatcaaat |
300 |
Q |
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| T |
5129527 |
tcatctatcttgtcttcttagtctttatctgctccttgaaaagcgtttttgaatcctgagtctgaaatataaccacttatttgaggagctttgatcaaat |
5129428 |
T |
|
| Q |
301 |
tgattgattagatttaaacaatttcaattttttgcatgatgttgcttgagatgtcagatgatattataagcatcgtgtaacaacatacaaaataaagaat |
400 |
Q |
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| T |
5129427 |
tgattgattagatttaaacaatttcaattttttgcatgatgttgcttgagatgtaagatgatattataagcatcgtgtcacaacatacaaaataaagaat |
5129328 |
T |
|
| Q |
401 |
ttaaggaaagcatgcttgaaaacacgaacactacatttatgaattactgtcttatcatttgtcagtnnnnnnngttggttgcaattatagtaa |
493 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5129327 |
ttaaggaaagcatgcttgaaaacacaaacactacatttatgaattactgtcttatcatttgtcagtaaaaaaagttggttgcaattatagtaa |
5129235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 1601534 - 1601575
Alignment:
| Q |
215 |
ttcttagtctttatctgctccttgaaaagggtttctgaatcc |
256 |
Q |
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| T |
1601534 |
ttcttagtctttaactgctccttgaaaagggtttctgaatcc |
1601575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 8527534 - 8527497
Alignment:
| Q |
219 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
256 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
8527534 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
8527497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 8534125 - 8534088
Alignment:
| Q |
219 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
256 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
8534125 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
8534088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 48363166 - 48363207
Alignment:
| Q |
215 |
ttcttagtctttatctgctccttgaaaagggtttctgaatcc |
256 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
48363166 |
ttcttaatctttaactgctccttgaaaagggtttctgaatcc |
48363207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 9441868 - 9441831
Alignment:
| Q |
219 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
256 |
Q |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
9441868 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
9441831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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