View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_20 (Length: 493)
Name: NF12942_high_20
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Complemental strand, 31097868 - 31097392
Alignment:
| Q |
17 |
aaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgagacggattggttggggtaga |
116 |
Q |
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| T |
31097868 |
aaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgagacggattggtcggggtaga |
31097769 |
T |
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| Q |
117 |
ggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatccacatcatggagacagcaag |
216 |
Q |
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| T |
31097768 |
ggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatccacatcatggagacagcaag |
31097669 |
T |
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| Q |
217 |
gcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatatttttatcaagtcagtttttatatcaagatttaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097668 |
gcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatatttttatcaagtcagtttttatatcaagatttaat |
31097569 |
T |
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| Q |
317 |
taacaatcagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatccctttagagttctatatactgatcaaaggtagcaagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097568 |
taacaatcagtttgatatttttaaattgataaagttttttttacttattctcaatctttatccctttagagttctatatactgatcaaaggtagcaagaa |
31097469 |
T |
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| Q |
417 |
ttcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactgatgatgtccatctcat |
493 |
Q |
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| T |
31097468 |
ttcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtccacctcat |
31097392 |
T |
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