View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_24 (Length: 468)
Name: NF12942_high_24
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 2594848 - 2595008
Alignment:
| Q |
92 |
ttattataggatgacaccaatgtagatgattagttttgattgttagctagttagattgaataatgtgccagctgtacaaactgttgtgacagttagactt |
191 |
Q |
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| T |
2594848 |
ttattatagtatgacaccaatgtagatgattagttttgattgttagttagttagattgaataatgtgccagctgtacaaactgttgtgacagttagactt |
2594947 |
T |
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| Q |
192 |
ttcctaattcataggagattagttagatagtggattacttgcacatgaagtaaccacaaag |
252 |
Q |
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| T |
2594948 |
ttcctaattcataggagattagttagatagtggattacttgcacatgaagtaaccacaaag |
2595008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 248 - 395
Target Start/End: Original strand, 2595566 - 2595713
Alignment:
| Q |
248 |
caaagagcaagttatgaaaatcatttgaaactttaacaaaaagttgttgaaaaatagtttacttcaagttgttctacattagtaggtaattattactaat |
347 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2595566 |
caaagagcaaggtatgaaaatcatttgaaactttaactcaaagttgttgaaaaatagtttacttcaagttgttttacattagtaggtaattattactaat |
2595665 |
T |
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| Q |
348 |
acaattttcaaataagacgtagaacaagacttcttcaataaatccttc |
395 |
Q |
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| T |
2595666 |
acaattttcaaataagaggtagaacaagacttcttcaataaatccttc |
2595713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 2640493 - 2640572
Alignment:
| Q |
309 |
cttcaagttgttctacattagtaggtaattattactaatacaattttcaaataagacgtagaacaagacttcttcaataa |
388 |
Q |
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| T |
2640493 |
cttcaagttgttctacattagtatgtaattattactaatgcaattttcaaataagaggtagaacaagacttcttcaataa |
2640572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 2640329 - 2640411
Alignment:
| Q |
10 |
tccattctcgtctcagctccgacaacctcaaatcttctttgttgaaacaatggttttaattggttggtttctgatgaactcat |
92 |
Q |
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|||||||||||| |||| |||||| | |||| ||| ||||| |||| ||||||| |||||||||||||||||||||| |||| |
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| T |
2640329 |
tccattctcgtcccagccccgacagcatcaactctcttttgtcgaaaaaatggttgtaattggttggtttctgatgaattcat |
2640411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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