View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_25 (Length: 460)
Name: NF12942_high_25
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 43103853 - 43104213
Alignment:
| Q |
17 |
caacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctctccaaccatgtacatgtgccttaat |
116 |
Q |
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| T |
43103853 |
caacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctctccaaccatgtacatgtgccttaat |
43103952 |
T |
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| Q |
117 |
gtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaataatcactctctttgagctttagactagggcaaaagtctcca |
216 |
Q |
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| T |
43103953 |
gtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaataatcactctctttgagctttagactagggcaaaagtctcca |
43104052 |
T |
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| Q |
217 |
cttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttgaaacatttccatcacctttccctgtttgtcattcgagggggaga |
316 |
Q |
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| T |
43104053 |
cttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttgaaacatttccatcacctttccctgtttgtcattcgagggggaga |
43104152 |
T |
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| Q |
317 |
aatgtgtcaatagaaag--nnnnnnnnttacaaatatctatatgataagatgtgattttat |
375 |
Q |
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| T |
43104153 |
aatgtgtcaatagaaagaaaaaaaaaattacaaatatctatatgataagatgtgattttat |
43104213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 43107076 - 43107334
Alignment:
| Q |
17 |
caacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctctccaaccatgtacatgtgccttaat |
116 |
Q |
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| T |
43107076 |
caacagtgttccctttaccaatattaggttttttgatgatatgaagcataacattctcaaactcttccccatctctccaaccatgtacatgtgcctttat |
43107175 |
T |
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| Q |
117 |
gtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaat----aatcactctctttgagctttagactagggcaaaagtc |
212 |
Q |
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||| || ||||||||||| || |||||| |||| |||||||| ||||||||| | || |||||||||||||||| |||| |||||| |||||||| |
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| T |
43107176 |
gtctttagaatttttagagacaaaatcaaacaattgaaagttca-tctaggcatgagataatcaatcactctctttgaggtttaaactaggacaaaagtc |
43107274 |
T |
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| Q |
213 |
tccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttg |
272 |
Q |
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| T |
43107275 |
attatttccatcttctaggtagatgaatttcttctttccttcatcatcaagtgaattttg |
43107334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 43104244 - 43104324
Alignment:
| Q |
373 |
tatatttttattttataaagttaaaa----gtatattaactcaatatagaagctgctctagctctacataacatgaagtat |
449 |
Q |
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| T |
43104244 |
tatatttttattttataaagttaaaacaaagtatattaactcaatatagaagctgctctagctctacatagcatgaagtat |
43104324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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