View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12942_high_26 (Length: 460)
Name: NF12942_high_26
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 172 - 440
Target Start/End: Complemental strand, 13348351 - 13348084
Alignment:
| Q |
172 |
taggttggggttacgccggagagagtggaagtgccgagaagtttggtggatgaagaaatgcaagagaaagtgaaagaaatgcctgaagaacatcgacctc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348351 |
taggttggggttacgccggagagagtggaagtaccgagaagtttggtggatgaagaaatgcaagagaaagtgaaagaaatgcctgaagaacatcgacctc |
13348252 |
T |
|
| Q |
272 |
atgttcctgttggtgctgatcttaaatggagatatttttggaggattggtgatcgcccctctaatactaaatttcaggtgttcttttattgttctatcgt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13348251 |
atgttcctgttggtgctgatcttaaatggagatatttttggaggattggtgatcgcccctctaatactaaatttcaggtgttcttttattgttct-tcgt |
13348153 |
T |
|
| Q |
372 |
ttttccttttctgtaatctgtttgtttgctcaatgaaaatccgattaaagttcaatattttgcgatatc |
440 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13348152 |
ttttccttttctgtaatctgtttacctgctcaatgaaaatccgattaaagttcaatattttgctatatc |
13348084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 13348702 - 13348534
Alignment:
| Q |
5 |
tgtcgaagaatatgatcgtttcattgatatgatggaaaactacttctcagctcctcatgacttcaagattcgccaagagagacctcatttgcattaccag |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13348702 |
tgtcgaagataatgatcgtttcattgatatgatggaaaactacttctcagctcctcatgagttcaagattcgtcaagagagacctcatttgcattaccag |
13348603 |
T |
|
| Q |
105 |
gttcattaatcgtttcacttatttactagtttaaattgaaattagagtttaattactgtataatgtata |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348602 |
gttcattaatcgtttcacttatttactagtttaaattgaaattagagtttaattactgtataatgtata |
13348534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University