View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_3 (Length: 740)
Name: NF12942_high_3
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40249446 - 40249683
Alignment:
| Q |
1 |
atattcaatccacaacacataattacaatcagacttgaaaaactgaatactaaaaagtggttattcatcctataaaaggcgaaaaatgattgaaggccaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40249446 |
atattcaatccacagcacataattacaatcagacttgaaaaactgaatactaaaaagtggttattcatcctataaaaggcgaaaaatgattcaaggccaa |
40249545 |
T |
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| Q |
101 |
aaggagaaaactcatatatgtaaccacttttgatcaaagaatgatctcatatgtcagagattatgtggagatatttgtagaaatgaacaaaaatatatca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40249546 |
aaggagaaaactcatttatgtaaccacttttgatcaaagaatgatctcatatgtcagagattatgtggagatatttgtagaaatgaacaaaaatatacca |
40249645 |
T |
|
| Q |
201 |
aatg-nnnnnnntggggtatgctttaatatactaatag |
237 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
40249646 |
aatgaaaaaaaatggggtatgctttaatatactaatag |
40249683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 525 - 724
Target Start/End: Original strand, 40250672 - 40250871
Alignment:
| Q |
525 |
tctttgaccctcttatatattatcatgttcagattcagattcattcacataaacatgagattcagatttagactccgaatgaagaatcgaagcgagatta |
624 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40250672 |
tctttgacactcttatatattatcatgttcagattcagattcattcacataaacatgagattcagatttagactccgaatgaagaatcgaagtgagatta |
40250771 |
T |
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| Q |
625 |
tcaagaatctatgggcttacgacatggatggatcacagtggttggtgtgggaggcggtggaggagtggacggtgatgatttagttggtggtggttgtttc |
724 |
Q |
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| T |
40250772 |
tcaagaatctatgggcttacgacatggatggatcacaatggttggtgtgggagggggtggaggagtggacggtgacgatttagttggtggtggttgtttc |
40250871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 305 - 416
Target Start/End: Original strand, 40250436 - 40250547
Alignment:
| Q |
305 |
tttttatccaccattgttcttccttttatcgattttgaagaaacacacaaacccacctactactccatttttatttcattattcttcactacaaaatcaa |
404 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40250436 |
tttttatccaccattgttcttccttttattgattttgaagaaacacacaaacccacctactactccatttttatttcattattcttcactacaaaatcaa |
40250535 |
T |
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| Q |
405 |
actcaccagcca |
416 |
Q |
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|||||||||||| |
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| T |
40250536 |
actcaccagcca |
40250547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 561 - 724
Target Start/End: Original strand, 31624859 - 31625019
Alignment:
| Q |
561 |
agattcattcacataaacatgagattcagatttagactccgaatgaagaatcgaagcgagattatcaagaatctatgggcttacgacatggatggatcac |
660 |
Q |
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||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || |
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| T |
31624859 |
agattcattcatataaacgtgagattcagaattagattccaaatgaagaatcaaagtgagattatcaagaatcagtgggcttacgacatggatgg---ac |
31624955 |
T |
|
| Q |
661 |
agtggttggtgtgggaggcggtggaggagtggacggtgatgatttagttggtggtggttgtttc |
724 |
Q |
| |
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| T |
31624956 |
ggtggttggtgtgggaggcggtggaggagtgaacggtgattatttagttggtggtggttgtttc |
31625019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 40249791 - 40249727
Alignment:
| Q |
247 |
cctattataatcatattctttcttcacgtcaaatgtcaaaatgtgaatgagggaattctttttat |
311 |
Q |
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| T |
40249791 |
cctattataatcatattctttcttcacgtcaaatgtcaaaatgtgaatgagggaattctttttat |
40249727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 40250627 - 40250667
Alignment:
| Q |
495 |
tcaccctttaatgcttcttctttttctcaatctttgaccct |
535 |
Q |
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| T |
40250627 |
tcaccctttaatgcttcttctttttctcaatctttgaccct |
40250667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 550 - 724
Target Start/End: Complemental strand, 5687824 - 5687653
Alignment:
| Q |
550 |
tgttcagattcagattcattcacataaacatgagattcagatttagactccgaatgaagaatcgaagcgagattatcaagaatctatgggcttacgacat |
649 |
Q |
| |
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||||||||||| |||||||||| |||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5687824 |
tgttcagattcggattcattcatataaacgtgagattcagatttagattccaaataaagaatcgaagcgagattatcaagaatcagtgggcttacgacat |
5687725 |
T |
|
| Q |
650 |
ggatggatcacagtggttggtgtgggaggcggtggaggagtggacggtgatgatttagttggtggtggttgtttc |
724 |
Q |
| |
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|||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5687724 |
ggatgg---acggtggttggtgtgggaggcagtggaggagtgaacggtgatgatttagttggtggtggttgtttc |
5687653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 552 - 724
Target Start/End: Original strand, 22622546 - 22622717
Alignment:
| Q |
552 |
ttcagattcagattcattcacataaaca---tgagattcagatttagactccgaatgaagaatcgaagcgagattatcaagaatctatgggcttacgaca |
648 |
Q |
| |
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|||| ||||||||||||||| ||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22622546 |
ttcaaattcagattcattcatataaacactatcagattcagatttagactcttacagaagaatcgaagcgagattatcaagaatcgatgggcttacgaca |
22622645 |
T |
|
| Q |
649 |
tggatggatcacagtggttggtgtgggaggcggtggaggagtggacggtgatgatttagttggtggtggttgtttc |
724 |
Q |
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|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22622646 |
tggatggatcacggtgtttggtgtgggaggcggtgg----gtggacggtgatgatttagttggtggtggttgtttc |
22622717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 558 - 724
Target Start/End: Original strand, 46674405 - 46674568
Alignment:
| Q |
558 |
ttcagattcattcacataaacatgagattcagatttagactccgaatgaagaatcgaagcgagattatcaagaatctatgggcttacgacatggatggat |
657 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46674405 |
ttcagattcattcatataaacgtgagattcagatttagattccaaataaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatgg-- |
46674502 |
T |
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| Q |
658 |
cacagtggttggtgtgggaggcggtggaggagtggacggtgatgatttagttggtggtggttgtttc |
724 |
Q |
| |
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|| |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
46674503 |
-acggtggttggtgtgggaggcggtgaaagagtgaacggtgatgatttagttggtggtggttgtttc |
46674568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 704
Target Start/End: Complemental strand, 36822521 - 36822461
Alignment:
| Q |
644 |
cgacatggatggatcacagtggttggtgtgggaggcggtggaggagtggacggtgatgatt |
704 |
Q |
| |
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|||| |||||||||||| ||||||| ||| ||||||||||| ||||||||||||| ||||| |
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| T |
36822521 |
cgacgtggatggatcacggtggttgatgttggaggcggtggtggagtggacggtgctgatt |
36822461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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