View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_37 (Length: 405)
Name: NF12942_high_37
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 104 - 382
Target Start/End: Original strand, 15592059 - 15592337
Alignment:
| Q |
104 |
tcaatctaactaatgctaattcaatgatatctattaaaataaaattctaatcaatggtgtaacttgtatcgtaagtaatccagatgcattgagtagtatc |
203 |
Q |
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| T |
15592059 |
tcaatctaactaatgcgaattcaatgatatctattaaaataaaattctaatcaatggattaacttgtatcgtaagtaatccagatgcattgagtagtatc |
15592158 |
T |
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| Q |
204 |
tttggtcacaatggctgcaacgatctctcttctttgaatgccttagttccatcattaggcaaacttgtatcaatgttatgatcttcatttatttcaacat |
303 |
Q |
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| T |
15592159 |
tttggtcaaaatggctgcaacgatctctcttctttgaatgtcttagttccatcactaggcaaacttgtatcattgttctgatctttatttatttgaacat |
15592258 |
T |
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| Q |
304 |
ttgattttgtgtttccttcacctgttgattcatcgaatttgacgatcttttctaatttctccatgtcatctcaaaaagt |
382 |
Q |
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| T |
15592259 |
ttgattttgtgtttccttcacctcttgattcatcgaatttgatgatcttttctaatttctccatgtcatcccaaaaagt |
15592337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 15637390 - 15637461
Alignment:
| Q |
311 |
tgtgtttccttcacctgttgattcatcgaatttgacgatcttttctaatttctccatgtcatctcaaaaagt |
382 |
Q |
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| T |
15637390 |
tgtgtttccttcacccattgattcatcgaattttaagaccttttctaatttctccatgtcatcccaaaaagt |
15637461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 15587468 - 15587519
Alignment:
| Q |
331 |
attcatcgaatttgacgatcttttctaatttctccatgtcatctcaaaaagt |
382 |
Q |
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| T |
15587468 |
attcatccaatttgatgaccttgtctaatttctccatgtcatcccaaaaagt |
15587519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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