View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_40 (Length: 394)
Name: NF12942_high_40
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 50390972 - 50390601
Alignment:
| Q |
1 |
ataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcaaagaaagcataagaggacgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390972 |
ataactgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcaaagaaagcataagaggacgag |
50390873 |
T |
|
| Q |
101 |
gaaatctgtactttgttagaaaatattctgaaacaaatccagagaaaacacgtcctaaataattccaaatacttactaaagacacaaaagtgcttatgct |
200 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50390872 |
gaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgct |
50390773 |
T |
|
| Q |
201 |
tttctttggatatctaagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaataccacaaatacatgccacaaatagtatcaac |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390772 |
tttctttggatatcttagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaataccacaaatacatgccacaaatagtatcaac |
50390673 |
T |
|
| Q |
301 |
atgtctatgctgaaaagtgcttgaagtatcgtataatcctcacctcttgccggtggattgaacacatcttcc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50390672 |
atgtctatgctgaaaagtgcttgaagtatcgtataatcctcacctcttgctggtggattgaacacatcttcc |
50390601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 372
Target Start/End: Complemental strand, 50385824 - 50385456
Alignment:
| Q |
4 |
actgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcaaagaaagcataagaggacgaggaa |
103 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| || |||| |||||||||||||||||||| |
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| T |
50385824 |
actgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtccaacacatgagacaaagagtgttaaagtaagcataagaggacgaggaa |
50385725 |
T |
|
| Q |
104 |
atctgtactttgttagaaaatattctgaaacaaatccagagaaaacacgtcctaaataattccaaatacttactaaagacacaaaagtgcttatgctttt |
203 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50385724 |
atctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgctttt |
50385625 |
T |
|
| Q |
204 |
ctttggatatctaagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaataccacaaatacatgccacaaatagtatcaacatg |
303 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
50385624 |
ctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtcaaagttcctccaacaccacaaatacatgccacaaatagtatcaacatg |
50385525 |
T |
|
| Q |
304 |
tctatgctgaaaagtgcttgaagtatcgtataatcctcacctcttgccggtggattgaacacatcttcc |
372 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50385524 |
tccatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggattgaacacatcttcc |
50385456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 372
Target Start/End: Complemental strand, 50394243 - 50393875
Alignment:
| Q |
4 |
actgaagctacatagagaccctgtggcacatcaaatgctatcaaaaggtgtcccacacaagagacaaagagagtcaaagaaagcataagaggacgaggaa |
103 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| || |||| |||||||||||||||||||| |
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| T |
50394243 |
actgaagctacgtagagaccctctggcacatcaaatgctatcagaaggtgtccaacacatgagacaaagagtgttaaagtaagcataagaggacgaggaa |
50394144 |
T |
|
| Q |
104 |
atctgtactttgttagaaaatattctgaaacaaatccagagaaaacacgtcctaaataattccaaatacttactaaagacacaaaagtgcttatgctttt |
203 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50394143 |
atctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgctttt |
50394044 |
T |
|
| Q |
204 |
ctttggatatctaagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaataccacaaatacatgccacaaatagtatcaacatg |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
50394043 |
ctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtcaaagttcctccaacaccacaaatacatgccacaaatagtatcaacatg |
50393944 |
T |
|
| Q |
304 |
tctatgctgaaaagtgcttgaagtatcgtataatcctcacctcttgccggtggattgaacacatcttcc |
372 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50393943 |
tccatgctgaaaagtgcttgaagtattgtataatcctcacctcttgctggtggattgaacacatcttcc |
50393875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 345
Target Start/End: Complemental strand, 50407757 - 50407512
Alignment:
| Q |
100 |
ggaaatctgtactttgttagaaaatattctgaaacaaatccagagaaaacacgtcctaaataattccaaatacttactaaagacacaaaagtgcttatgc |
199 |
Q |
| |
|
|||||| |||||||||||| || || ||| |||||||| ||||| ||||| | ||||| ||||||||||||||| ||||| || ||||| |||||||||| |
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|
| T |
50407757 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
50407658 |
T |
|
| Q |
200 |
ttttctttggatatctaagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaataccacaaatacatgccacaaatagtatcaa |
299 |
Q |
| |
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|| | ||||| |||| |||||| ||||| || ||||| | |||||||| |||||| || | |||||||| |||||| | | || | ||||| | || |
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| T |
50407657 |
ttgtttttgggtatccaagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacaccacatgtgccagcaaagaatagcaataa |
50407558 |
T |
|
| Q |
300 |
catgtctatgctgaaaagtgcttgaagtatcgtataatcctcacct |
345 |
Q |
| |
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|||||||||||||||||| ||||| | ||| ||| |||| |||||| |
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|
| T |
50407557 |
catgtctatgctgaaaagggcttgtaatatagtaaaatcttcacct |
50407512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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