View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_58 (Length: 289)
Name: NF12942_high_58
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 10971010 - 10970768
Alignment:
| Q |
9 |
gaacctgtgaagttgaaatcttggaaaagcaaaaatgtggaaccaatgcgatgatatgttgaggattttctttctacataccttccacttggacacaaaa |
108 |
Q |
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| T |
10971010 |
gaaccggtgaagttgaaatcttggaaaagcaaaaatgtggaaccaatgcgatgatatgttgaggattttctttctacatatctaccacttggacacaaaa |
10970911 |
T |
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| Q |
109 |
tttctttctacatatcttctttgactttaagaattgtgtgtaaataaagacaataatggtgagactcacggaacaacaatcaatgacaagtgtagccctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970910 |
tttctttctacatatcttctttgactttaagaattgtgtgtaaataaagacaataatggtgagactcacggaacaacaatcaatgacaagtgtagccctg |
10970811 |
T |
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| Q |
209 |
ctcttaatgttgtaaaataggcaaagtgaagggaaaatgatgg |
251 |
Q |
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| T |
10970810 |
cccttaatgttgtaaaataggcaaagtgaagggaaaatgatgg |
10970768 |
T |
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