View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_75 (Length: 240)
Name: NF12942_high_75
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48939453 - 48939232
Alignment:
| Q |
1 |
cttttgaatttataatcatgaattatccccttcttgataaatctgggcgaattgggtaaggtatattatatcaactaattaccctttttctatggcaaca |
100 |
Q |
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| T |
48939453 |
cttttgaatttataaccatgaattatccccttcttgataaatctgggcgaattgggtaaggtatattatatcaactaattaccctttttctatggcaaca |
48939354 |
T |
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| Q |
101 |
attgagaagaggtattattggatcagtggttttgattcattttaggtgatatatgttgctctcttattcataaaagttaaaacacactttccgtttctgg |
200 |
Q |
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| T |
48939353 |
attgagaagaggtattattggatcggtggttttgattcattttaggtgatatatgttgctctcttattcataaaagttaaaacacactttccgtttctgg |
48939254 |
T |
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| Q |
201 |
tgacggttctcgacggcatgag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48939253 |
tgacggttctcgacggcatgag |
48939232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 13701766 - 13701570
Alignment:
| Q |
1 |
cttttgaatttataatcatgaattatccccttcttgataaatctgggcgaattgggtaaggtatattatatcaactaattaccctttttctatggcaaca |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13701766 |
cttttgaatttataaccatgaattatccccttcttgataaatctgggcgaattgggtaaggtatattatatcaactaattaccctttttctatggcaaca |
13701667 |
T |
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| Q |
101 |
attgagaagaggtattattggatcagtggttttgattcattttaggtgatatatgttgctctcttattcataaaagttaaaacacactttccgtttc |
197 |
Q |
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| T |
13701666 |
attgagaagaggtattattggatcggtggttttgattcattttaggtgatatatgttgctctcttattcataaaagttaaaacacactttccgtttc |
13701570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 31591764 - 31591640
Alignment:
| Q |
102 |
ttgagaagaggt--attattggatcagtggttttgattcattttaggtgatatatgttgctctcttattcataaaagttaaaacacactttccgtttctg |
199 |
Q |
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|||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31591764 |
ttgagaagaggtgtattatttgatcggtggttttgattcattttaggtgatatatgttgctctcttattcataaaagttaaaacacactttccgtttccg |
31591665 |
T |
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| Q |
200 |
gtgacggttctcgacggcatgaggg |
224 |
Q |
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| T |
31591664 |
gtgacggttctcaacggcaggaggg |
31591640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31591821 - 31591785
Alignment:
| Q |
23 |
ttatccccttcttgataaatctgggcgaattgggtaa |
59 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31591821 |
ttatccccttcttgataaatctgggcgaattgggtaa |
31591785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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