View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_77 (Length: 239)
Name: NF12942_high_77
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_77 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50390986 - 50391210
Alignment:
| Q |
1 |
tttggtgctcaatggccgttactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataatttaggaagtataacaagtccaa |
100 |
Q |
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| T |
50390986 |
tttggtgctcaatggccgttactttttgccattatatcagaactctttggacttaaatattatgcaactttgtataattttggaagtataacaagtccaa |
50391085 |
T |
|
| Q |
101 |
ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttggaaagcaaagaatagaagggca |
200 |
Q |
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| T |
50391086 |
ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctgagaaacaattggaagcacttggaaagcaaagaatagaagggca |
50391185 |
T |
|
| Q |
201 |
ggaattgaattgtgttggcgatgat |
225 |
Q |
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|||||||||||||||||||| |||| |
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| T |
50391186 |
ggaattgaattgtgttggcgttgat |
50391210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 50394260 - 50394477
Alignment:
| Q |
1 |
tttggtgctcaatggccgttactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataatttaggaagtataacaagtccaa |
100 |
Q |
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| T |
50394260 |
tttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccac |
50394359 |
T |
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| Q |
101 |
ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttggaaagcaaagaatagaagggca |
200 |
Q |
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| T |
50394360 |
ttggattatatgtgcttaatgtgaagatcactggtcatttgtatgacaaagaggctaagaaacaattggaagcacttggaaagcatagaatagaagggca |
50394459 |
T |
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| Q |
201 |
ggaattgaattgtgttgg |
218 |
Q |
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| T |
50394460 |
tgaattgaattgtgttgg |
50394477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 50385841 - 50386058
Alignment:
| Q |
1 |
tttggtgctcaatggccgttactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataatttaggaagtataacaagtccaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
50385841 |
tttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtcccc |
50385940 |
T |
|
| Q |
101 |
ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttggaaagcaaagaatagaagggca |
200 |
Q |
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| T |
50385941 |
ttggattatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcacttggaaagcaaagaatagaagggca |
50386040 |
T |
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| Q |
201 |
ggaattgaattgtgttgg |
218 |
Q |
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| T |
50386041 |
ggaattgaattgtgttgg |
50386058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 50407963 - 50408029
Alignment:
| Q |
94 |
agtccaattggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaaga |
160 |
Q |
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| T |
50407963 |
agtccaattggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaaga |
50408029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 34297297 - 34297371
Alignment:
| Q |
106 |
ttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttgga |
180 |
Q |
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| T |
34297297 |
ttatatgtgcttaatgttacaatcactggtcatttgtatgacaaggaagctaataatcaattggaagcacttgga |
34297371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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