View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_78 (Length: 239)
Name: NF12942_high_78
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 41791594 - 41791382
Alignment:
| Q |
12 |
tagcttcttggacaataactcattctcctttgtagggcattttcgtactctttaggatctgggatgcaaaatcagggagattaccaacatactgacatac |
111 |
Q |
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| T |
41791594 |
tagcttcttggacaataactcattctcctttgtagggcattttcgtactctttgggatctgggatgcaaaatcagggagattaccaacatactgacatac |
41791495 |
T |
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| Q |
112 |
atgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagatgatagc |
211 |
Q |
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| T |
41791494 |
atgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagatgataac |
41791395 |
T |
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| Q |
212 |
ataatgttactaa |
224 |
Q |
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| T |
41791394 |
ataatgttactaa |
41791382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41780187 - 41779964
Alignment:
| Q |
1 |
atttatttttctagcttcttggacaataactcattctcctttgtagggcattttcgtactctttaggatctgggatgcaaaatcagggagattaccaaca |
100 |
Q |
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| T |
41780187 |
atttattattttagcttcttggacaataaatcattctcctttgcagggcatttttgtactctctgagatctcagacgcaaaatcagggagattacgagca |
41780088 |
T |
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| Q |
101 |
tactgacatacatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaa |
200 |
Q |
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| T |
41780087 |
tactgacatatgtgatcaatgcacttgataactcttaacttgttcacaggttttggacaatcgtcatcagttacacacggaaaatgcgctgtaatgaaaa |
41779988 |
T |
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| Q |
201 |
gagatgatagcataatgttactaa |
224 |
Q |
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| T |
41779987 |
gagatgataacataatgttactaa |
41779964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 41785739 - 41785531
Alignment:
| Q |
13 |
agcttcttggacaataactcattctcctttgtagggcattttcgtactctttaggatctgggatgcaaaatcagggag---attaccaacatactgacat |
109 |
Q |
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| T |
41785739 |
agcttcttggataataactcattctcttttacggggcatttttgtactctctggaatctgggatgcaaaatcagggcgataattataaccatactcacat |
41785640 |
T |
|
| Q |
110 |
acatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagatgata |
209 |
Q |
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| T |
41785639 |
atgtgttcaatgcacttgacaactcttaaatggttcacaggttttggacaaccgtcatcagttacacgctgaaaaacctctgtaatgaaaagagatggta |
41785540 |
T |
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| Q |
210 |
gcataatgt |
218 |
Q |
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| T |
41785539 |
acataatgt |
41785531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 1681334 - 1681433
Alignment:
| Q |
106 |
acatacatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagat |
205 |
Q |
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| T |
1681334 |
acatacgtgatcaatgcatttaatagctaataagttgttcaaggattttggacaatcatcatcagtttcacatttaatatgtgctgtaatgaaaagagat |
1681433 |
T |
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