View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_8 (Length: 687)
Name: NF12942_high_8
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 672
Target Start/End: Complemental strand, 7494775 - 7494099
Alignment:
| Q |
17 |
taagaaaaagcaacaaatagacaaattatactcactctttcagactgtgtcaaaagaagagttttgggatcgatgaataatagtcggttttgtgctggtt |
116 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7494775 |
taagaaaaagcaataaatagacaaattacactcactctttcagtctgtgtcaaaagaagagttttgggatcaatgaataatagtcggttttgtgctggtt |
7494676 |
T |
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| Q |
117 |
caactgccaaggattgtatgaaa-----gctttatgggatatttgttataacgata-----------------cagtgcctttcgataaagctccttaaa |
194 |
Q |
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| T |
7494675 |
caattgccaaggattgtatgtaatggaagctgtatgggatatttgttataaggataataacgatacagacatacagtgcctttcgataaagctccttaaa |
7494576 |
T |
|
| Q |
195 |
aattgtcgggttttaactgtcttacagtgtagcaaaccatgttttggttttttggctactgttgttttgtttccattc--tttggcttgatagcttttaa |
292 |
Q |
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| T |
7494575 |
aattgtcgggttttaactgtcttacggtgtagcaagaattgttttggttttctggctaccg-----ttgtttccattctttttggcttgatagcttttaa |
7494481 |
T |
|
| Q |
293 |
ggtggccacaaatgtaattcaaattgaagaag-aaaaaacatgatgacttattttcttatggaaacttcttttcttctcattgtttccattctattcgca |
391 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7494480 |
ggtgaccacaaatgtaattcaaattgaagaagaaaaaaacatgatgacttattttcttatggaaacttcttttcttctcattgtttccattctattcgca |
7494381 |
T |
|
| Q |
392 |
gggacaggatcgtattctgcttattttgtctctgctattgatttcttgttagcttatcaagttattttttcttgaataattgatgtggtggcatcagttg |
491 |
Q |
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| T |
7494380 |
gggactggatcgtattctgcatattttgtctctgctattgatttcttgttagcttatcaagttattttttcttgaataattgatgtggtggcatcagttg |
7494281 |
T |
|
| Q |
492 |
cagagttgacagagtagcgggaaagtgagtttgcagtaagccatgttttctcatttattgaggagtggtaaggcaaattgttgcagttcaatcttctttt |
591 |
Q |
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| T |
7494280 |
cagagttgacagagtagcgggaaagtgagtttgtagtaagccatgttttctcatttattgtggagtggtaaggtaaattgttgcagttcaatcttctttt |
7494181 |
T |
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| Q |
592 |
gctcttaggcgttggaagtatcatttggtcaataaggcttataggagctttggtggcatctatg-tttttatgtcctttttt |
672 |
Q |
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| T |
7494180 |
gctcttaggcgttggaagtatcatttggtcaataaggcttataagagctttggtggcatctatgttttttatgtcctttttt |
7494099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 7491667 - 7491605
Alignment:
| Q |
261 |
ttgtttccattctttggcttgatagcttttaaggtggccacaaatgtaattcaaattgaagaa |
323 |
Q |
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| T |
7491667 |
ttgtttccattctttggcttgatactttttaaggtgatcacaaatgtaattcaaattcaagaa |
7491605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 7491776 - 7491704
Alignment:
| Q |
124 |
caaggattgtatgaaagctttatgggatatttgttataacgatacagtgcctttcgataaagctccttaaaaa |
196 |
Q |
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| T |
7491776 |
caaggattctatggaagctgtatggaatatttgttacaatgatacagcgcctttcgataaagctccttgaaaa |
7491704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 19152028 - 19151934
Alignment:
| Q |
106 |
ttgtgctggttcaactgccaaggattgtatgaaagctttatgggatatttgttataacgatacagtgcctttcgataaagctccttaaaaattgt |
200 |
Q |
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| T |
19152028 |
ttgttctgcttcaactgccaaggatgctatggaagctgtatgggaaacttgttataacgatacagcgccttttgatagagctccttaaagattgt |
19151934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 19158076 - 19158021
Alignment:
| Q |
261 |
ttgtttccattctttggcttgatagcttttaaggtggccacaaatgtaattcaaat |
316 |
Q |
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| T |
19158076 |
ttgtttccattctttggcttgataccatttaaggtgatcataaatgtaattcaaat |
19158021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 19158204 - 19158120
Alignment:
| Q |
103 |
gttttgtgctggttcaactgccaaggattgtatgaaagctttatgggatatttgttataacgatacagtgcctttcgataaagct |
187 |
Q |
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| T |
19158204 |
gttttgttctggttcaactgcgaagaatgctatggaagctgtatgggaaacttgttataatgatacagcgccttttgatagagct |
19158120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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