View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_high_9 (Length: 673)
Name: NF12942_high_9
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Complemental strand, 3609372 - 3608896
Alignment:
| Q |
20 |
gtcttttgatcaatataattttttatgtatcttactttcacttgatttataaagctcnnnnnnncttcttatgctcaaaatcttaatatggtatcagagc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
3609372 |
gtcttttgatcaatataattttttatgtatcttactttcacttgatttataaagctctttttttcttcttatgctcaaaattttaatatggtatcagagc |
3609273 |
T |
|
| Q |
120 |
ttggttgtgatcttcacgatgccgctatttcactgcgatttttcgagtgatcattgatccaccaacctttctcatggcctatgccattctctgccattta |
219 |
Q |
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||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3609272 |
ctggttgtgatcttcatgatgccgttatttcactgtgatttttcgagtgatcattgatccaccaacctttctcatggcctatgccattctctgccattta |
3609173 |
T |
|
| Q |
220 |
tggaagccttcaaaagtggaaaggaaattcacacctctgtcacttcttccatccactctcaaaaacaagaataagattaatgataaaaacgtgtttttag |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3609172 |
tggaagccttcaaaagtggaaaggaaattcacacctctgtcacttcttccatccactctcaaaaacaagaataagattaatgataaaaacgtgcttttag |
3609073 |
T |
|
| Q |
320 |
tgccatgtttccatcctctcagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagcca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3609072 |
tgccatgtttccatcctctcagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagcca |
3608973 |
T |
|
| Q |
420 |
aaatcacggagacaatttccacatattttccatgtcttctttaattggtaaattttccaattatgagtttgaggggg |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3608972 |
aaatcacggagacaatttccacatattttccatgtcttctttaattagtaaattttccaattatgagtttgaggggg |
3608896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 553 - 657
Target Start/End: Complemental strand, 3608835 - 3608730
Alignment:
| Q |
553 |
taatgtctcacaagctctttatatataaagcatctcatgtatt-attcaatatattttgatcattataattttctatgaattttactttaactataaagc |
651 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608835 |
taatgtctcacaagctctttatatataaagcatctcatgtattcattcaatatattttgatcattataattttctatgaattttactttaactataaagc |
3608736 |
T |
|
| Q |
652 |
tctttt |
657 |
Q |
| |
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|||||| |
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|
| T |
3608735 |
tctttt |
3608730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 639
Target Start/End: Original strand, 28461141 - 28461174
Alignment:
| Q |
606 |
ttttgatcattataattttctatgaattttactt |
639 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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| T |
28461141 |
ttttgatcaatataattttctatgaattttactt |
28461174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 39219773 - 39219705
Alignment:
| Q |
173 |
ttgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaa |
241 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| ||||||||||||||||||||||| ||||||| |||||| |
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| T |
39219773 |
ttgatccaccaagatttatcacggcctattccattctctgccatttatggaagatttcaaaaatggaaa |
39219705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 400
Target Start/End: Original strand, 15551251 - 15551339
Alignment:
| Q |
315 |
tttagtgccatgtttccatcctctcag---aacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagag |
400 |
Q |
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|||||||| |||||||| ||||||||| |||| |||||||||| ||| | |||| |||||| ||||||||||||| |||| |||||| |
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| T |
15551251 |
tttagtgctatgtttccgtcctctcagcagaacagcaacttggattcaaaattaagaattaaataagaaatagtggcttcctaggagag |
15551339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 434
Target Start/End: Original strand, 15584900 - 15584992
Alignment:
| Q |
339 |
cagaacaacaacttggatccaagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaa |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| || || ||||| |||||||||||| |
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| T |
15584900 |
cagaacaaaaacttggatccaaatttaagggttaaagaagaa---gtggcttccttggagagataccacattttgctgccaatgtcacggagacaa |
15584992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 36572294 - 36572237
Alignment:
| Q |
15 |
tcactgtcttttgatcaatataattttttatgtatcttactttcacttgatttataaa |
72 |
Q |
| |
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||||| ||||||||||||||||||||| || || |||||||||||||| ||||||| |
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| T |
36572294 |
tcactatcttttgatcaatataattttcaataaattttactttcacttgagttataaa |
36572237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 636
Target Start/End: Original strand, 34323826 - 34323859
Alignment:
| Q |
603 |
atattttgatcattataattttctatgaatttta |
636 |
Q |
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|
|||||||||||| ||||||||||||||||||||| |
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|
| T |
34323826 |
atattttgatcaatataattttctatgaatttta |
34323859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 658
Target Start/End: Original strand, 39994998 - 39995051
Alignment:
| Q |
606 |
ttttgatcattataattttctatgaattttact-ttaactataaagctcttttt |
658 |
Q |
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||||||||| ||||||||||||||||||||||| | | ||||||||||||||| |
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|
| T |
39994998 |
ttttgatcaatataattttctatgaattttactctgagttataaagctcttttt |
39995051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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