View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_1 (Length: 1400)

Name: NF12942_low_1
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_1
NF12942_low_1
[»] chr1 (12 HSPs)
chr1 (642-1357)||(50391627-50392343)
chr1 (1-585)||(50390986-50391570)
chr1 (1-407)||(50394260-50394666)
chr1 (1-480)||(50385841-50386318)
chr1 (960-1074)||(11199914-11200030)
chr1 (960-1024)||(43834538-43834602)
chr1 (961-1036)||(52551269-52551344)
chr1 (675-733)||(20755024-20755082)
chr1 (954-996)||(39030152-39030194)
chr1 (94-160)||(50407963-50408029)
chr1 (953-1001)||(6356867-6356916)
chr1 (301-354)||(19712372-19712425)
[»] chr7 (7 HSPs)
chr7 (106-246)||(34297297-34297438)
chr7 (942-1027)||(38116719-38116804)
chr7 (952-1020)||(27938807-27938875)
chr7 (964-1027)||(25078144-25078207)
chr7 (954-1025)||(45100226-45100297)
chr7 (960-1037)||(33730103-33730180)
chr7 (960-1001)||(6677091-6677132)
[»] chr5 (5 HSPs)
chr5 (962-1032)||(27856164-27856234)
chr5 (954-1037)||(28296072-28296155)
chr5 (977-1024)||(18415618-18415665)
chr5 (962-1038)||(15159178-15159254)
chr5 (962-1032)||(21488819-21488889)
[»] chr8 (5 HSPs)
chr8 (952-1001)||(19263309-19263358)
chr8 (952-995)||(38291857-38291900)
chr8 (960-1025)||(5073024-5073089)
chr8 (985-1034)||(2372874-2372923)
chr8 (972-1037)||(1418035-1418100)
[»] chr3 (9 HSPs)
chr3 (952-1001)||(50435-50484)
chr3 (960-1021)||(42059846-42059907)
chr3 (960-1019)||(43978626-43978685)
chr3 (962-1015)||(43407680-43407733)
chr3 (651-714)||(18721220-18721284)
chr3 (962-1026)||(37626642-37626706)
chr3 (954-1001)||(15863149-15863196)
chr3 (990-1032)||(28979035-28979077)
chr3 (955-1016)||(23161955-23162016)
[»] chr2 (7 HSPs)
chr2 (955-1024)||(19548187-19548256)
chr2 (941-1024)||(8252621-8252704)
chr2 (960-1024)||(10066574-10066638)
chr2 (952-1024)||(34217580-34217652)
chr2 (975-1026)||(40732555-40732606)
chr2 (952-995)||(6467003-6467046)
chr2 (952-1001)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (952-1001)||(193-242)
[»] chr6 (4 HSPs)
chr6 (954-1023)||(14221276-14221345)
chr6 (968-1025)||(28940816-28940873)
chr6 (977-1026)||(33424561-33424610)
chr6 (674-741)||(28013490-28013557)
[»] chr4 (7 HSPs)
chr4 (952-1001)||(22681170-22681219)
chr4 (954-1024)||(11307624-11307694)
chr4 (954-1024)||(26986701-26986771)
chr4 (963-1023)||(21748248-21748308)
chr4 (952-995)||(42756772-42756815)
chr4 (954-1016)||(20090557-20090619)
chr4 (682-740)||(26054769-26054827)
[»] scaffold0548 (1 HSPs)
scaffold0548 (954-1025)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (954-1025)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 620; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 642 - 1357
Target Start/End: Original strand, 50391627 - 50392343
Alignment:
Q  642 acaattgtataaattaataattaaaaactatgaaatctcattaaaataggaacaacaccagtacaatagaaatttaaatcattacttaaaaacttagtta 741  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  50391627 acaattgtataaattaataattaaaaactatgaaatctcattaaaataggaacagcaccactacaatagaaatttaaatcattacttaaaaacttagtta 50391726  T
Q  742 tgaacttatgaatgactaaccactcacacttgaaaaccaataatcttcccctcaaagtgtaagttcccaccacttatacttgatccaaacactaggatct 841  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  50391727 tgaacttatgaatgactaaccactcacacttgaaaaccaataatattcccctcaa-gtgtaagtttccaccacttatacttgatccaaacactaggatct 50391825  T
Q  842 caatcctgctcccaccaagctgaatttgggttctaataccacttgttggggaaataagtcaatatcttataaagcaaaaataagttaatattcccgaagc 941  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |   |    ||||||||||||||| |||||||||| |||    
T  50391826 caatcctgctcccaccaagctgaatttgggttctaataccacttgttggggaaataaggggag--cgacgaaagcaaaaataagtcaatattcccggagc 50391923  T
Q  942 ataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatagcaat 1041  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391924 ataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatagcaat 50392023  T
Q  1042 gtgcgactaaacactcatacttaaaatccaacattttaccagagttctcaacgtgatattagaatcatataatatccaccatggattctctaatgcatac 1141  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392024 gtgcgactaaccactcatacttaaaatccaacattttaccagagttctcaacgtgatattagaatcatataatatccaccatggattctctaatgcatac 50392123  T
Q  1142 cttttaagatattatcatcctcttcattctatctttgttgttt----gctaccatttattctattgtttttcattcaatgaatgttttctctaatatgaa 1237  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50392124 cttttaagatattatcatcctcttcattctatctttgttgtttgctagctaccatttattctattctttttcattcaatgaatgttttctctaatatgaa 50392223  T
Q  1238 aatatcatcaggatcatggatattgctctctcacatcaagaaactccacaataaataatattatgggtgttcaacaataagcctttctagtgaaaggttt 1337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392224 aatatcatcaggatcatggatattgctctctcacatcaagaaactccacaataaataatattatgggtgttcaacaataagcctttctagtgaaaggttt 50392323  T
Q  1338 gttatgagtgatattgctat 1357  Q
    ||||||||||||||||||||    
T  50392324 gttatgagtgatattgctat 50392343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 50390986 - 50391570
Alignment:
Q  1 tttggtgctcaatggccgttactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataatttaggaagtataacaagtccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50390986 tttggtgctcaatggccgttactttttgccattatatcagaactctttggacttaaatattatgcaactttgtataattttggaagtataacaagtccaa 50391085  T
Q  101 ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttggaaagcaaagaatagaagggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50391086 ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctgagaaacaattggaagcacttggaaagcaaagaatagaagggca 50391185  T
Q  201 ggaattgaattgtgttggcgttgattgtttcaagttatctttcattatcattgcagctgcaactttctttggtgctgttgttaaccttattttggtcgct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391186 ggaattgaattgtgttggcgttgattgtttcaagttatctttcattattattgcagctgcaactttctttggtgctgttgttaaccttattttggtcgct 50391285  T
Q  301 aggacaagaaagttttacaaaggtgacatatacaagaggtacagagaagaagctgaaatggtggaggtaaagaacgtgggaaagacagaagaaggtgaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391286 aggacaagaaagttttacaaaggtgacatatacaagaggtacagagaagaagctgaaatggtggaggtaaagaacgtgggaaagacagaagaaggtgaca 50391385  T
Q  401 aagttggcagcagcatcggcatgcggtgacaacttagaaatagggcaaatggttaaggatcatatcatagatcatagatccacaattaagtgtaaatatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391386 aagttggcagcagcatcggcatgcggtgacaacttagaaatagggcaaatggttaaggatcatatcatagatcatagatccacaattaagtgtaaatatt 50391485  T
Q  501 aaattttcccttaaaaaagtgtaaatatgaaatttaatatgttgtcatgcatattttctatatctatctaaaaagggaagacacg 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391486 aaattttcccttaaaaaagtgtaaatatgaaatttaatatgttgtcatgcatattttctatatctatctaaaaagggaagacacg 50391570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 50394260 - 50394666
Alignment:
Q  1 tttggtgctcaatggccgttactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataatttaggaagtataacaagtccaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||     
T  50394260 tttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccac 50394359  T
Q  101 ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttggaaagcaaagaatagaagggca 200  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  50394360 ttggattatatgtgcttaatgtgaagatcactggtcatttgtatgacaaagaggctaagaaacaattggaagcacttggaaagcatagaatagaagggca 50394459  T
Q  201 ggaattgaattgtgttggcgttgattgtttcaagttatctttcattatcattgcagctgcaactttctttggtgctgttgttaaccttattttggtcgct 300  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||   |||||||||||  ||    
T  50394460 tgaattgaattgtgttggtgttgattgtttcaagttatctttcattattattacagctgcaacattttttggtgctgttgtttcacttattttggtgtct 50394559  T
Q  301 aggacaagaaagttttacaaaggtgacatatacaagaggtacagagaagaagctgaaatggtggaggtaaagaacgtgggaaagacagaagaaggtgaca 400  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  50394560 aggactagaaagttttacaaaggtgacatatacaagaggtacagagaagaagctgaaatggtggaggtaaagaacgtgggtaagacagaagaagatgaca 50394659  T
Q  401 aagttgg 407  Q
    || ||||    
T  50394660 aaattgg 50394666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 50385841 - 50386318
Alignment:
Q  1 tttggtgctcaatggccgttactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataatttaggaagtataacaagtccaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||      
T  50385841 tttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtcccc 50385940  T
Q  101 ttggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttggaaagcaaagaatagaagggca 200  Q
    |||| ||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  50385941 ttggattatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcacttggaaagcaaagaatagaagggca 50386040  T
Q  201 ggaattgaattgtgttggcgttgattgtttcaagttatctttcattatcattgcagctgcaactttctttggtgctgttgttaaccttattttggtcgct 300  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| ||  |||||||||| || |||||||||||||||   ||||||||||| |||    
T  50386041 ggaattgaattgtgttggtgttgattgttacaagttatctttcattattatcacagctgcaacattttttggtgctgttgtttcacttattttggtggct 50386140  T
Q  301 aggacaagaaagttttacaaaggtgacatatacaagaggtacagagaagaagctgaaatggtggaggtaaagaacgtgggaaagacagaagaaggtgaca 400  Q
    ||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| | ||||||||| |||| |||||    
T  50386141 aggaccagaaagttttacaaaggtgacatatacaagagatatagggaagaagctgaaatggtggaggtaaagaacgtagaaaagacagaggaagatgaca 50386240  T
Q  401 aagttgg-cagcagcatcggcatgcggtgacaacttagaaatagggcaaatggttaaggatcatatcatagatcatagatc 480  Q
    ||||||| || |||||   |||||  | |||||||| ||| |||| ||||||||||||||  |||| ||||||||||||||    
T  50386241 aagttggtcaacagca---gcatgttgcgacaacttggaattaggacaaatggttaaggacgatattatagatcatagatc 50386318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 960 - 1074
Target Start/End: Complemental strand, 11200030 - 11199914
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttata-gcaatgtgcgac-taaacactc 1057  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||  ||| ||| |||||||| ||| ||| |||||    
T  11200030 acatctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactc 11199931  T
Q  1058 atacttaaaatccaaca 1074  Q
    | |||||||| ||||||    
T  11199930 acacttaaaacccaaca 11199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 960 - 1024
Target Start/End: Complemental strand, 43834602 - 43834538
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||||||||| ||||||||||||||||||||||||| ||| | | |||||||||| ||||||||    
T  43834602 acatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 961 - 1036
Target Start/End: Complemental strand, 52551344 - 52551269
Alignment:
Q  961 catctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttata 1036  Q
    ||||| |||| |||| || ||| |||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||    
T  52551344 catcttcatctaaaatctcaaggcattagatatatgtgtcacatctctcatatatctaacattttacacatttata 52551269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 675 - 733
Target Start/End: Complemental strand, 20755082 - 20755024
Alignment:
Q  675 aatctcattaaaataggaacaacaccagtacaatagaaatttaaatcattacttaaaaa 733  Q
    ||||||||||||||||||| ||||||| |||  ||| ||||||||| |||| |||||||    
T  20755082 aatctcattaaaataggaagaacaccactacggtaggaatttaaattattaattaaaaa 20755024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 954 - 996
Target Start/End: Complemental strand, 39030194 - 39030152
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatg 996  Q
    ||||| ||||||||| | |||||||||||||||||||||||||    
T  39030194 gacaccacatctccacctaaaaccttaagacattaggtatatg 39030152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 50407963 - 50408029
Alignment:
Q  94 agtccaattggcttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaaga 160  Q
    ||||||||||| |||||| | ||||||||   | || |||||||||| |||||||||||||||||||    
T  50407963 agtccaattggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaaga 50408029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 953 - 1001
Target Start/End: Original strand, 6356867 - 6356916
Alignment:
Q  953 tgacacgacatctccatccaaaacctt-aagacattaggtatatgagtca 1001  Q
    |||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  6356867 tgacaccacatctccacccaaaacctttaagacatgaggtatatgagtca 6356916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 19712425 - 19712372
Alignment:
Q  301 aggacaagaaagttttacaaaggtgacatatacaagaggtacagagaagaagct 354  Q
    ||||| ||| ||||||| ||||||||||||||||||| || |||||| ||||||    
T  19712425 aggactagagagttttataaaggtgacatatacaagaagttcagagaggaagct 19712372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 34297297 - 34297438
Alignment:
Q  106 ttatatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctaagaaacaattggaagcacttgga-aagcaaagaatagaagggcaggaa 204  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||   | ||| | || |||| |||    
T  34297297 ttatatgtgcttaatgttacaatcactggtcatttgtatgacaaggaagctaataatcaattggaagcacttggacaacgtaggaaaaaaaaggcatgaa 34297396  T
Q  205 ttgaattgtgttggcgttgattgtttcaagttatctttcatt 246  Q
    ||||||||| |||| ||||||||||| |||||||||||||||    
T  34297397 ttgaattgtattggtgttgattgtttgaagttatctttcatt 34297438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 942 - 1027
Target Start/End: Original strand, 38116719 - 38116804
Alignment:
Q  942 ataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 1027  Q
    |||| ||||| ||| || |||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| |||| |||||||    
T  38116719 ataagagaggatgaaaccacatcttcatccaaaaccttaagacgttatgtatacgtgtcacatatcttatatagccaatattttac 38116804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 952 - 1020
Target Start/End: Complemental strand, 27938875 - 27938807
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaac 1020  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  27938875 ttgacaccacatctacatccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaac 27938807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 964 - 1027
Target Start/End: Complemental strand, 25078207 - 25078144
Alignment:
Q  964 ctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 1027  Q
    ||||| ||||||||||||||||||| |||||||| |||||| ||||||||||| | ||||||||    
T  25078207 ctccacccaaaaccttaagacattatgtatatgaatcacatctcttatatatcgatcattttac 25078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 954 - 1025
Target Start/End: Complemental strand, 45100297 - 45100226
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 1025  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||  | |||||||||| |||||||||    
T  45100297 gacaccacatctccatctaaaactttaagacattagttatatgagtcatctctcttatatattcaacatttt 45100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 960 - 1037
Target Start/End: Original strand, 33730103 - 33730180
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 1037  Q
    ||||||||||||||||||||||  |||||| | |||| ||||| | |||| |||||||||||||| || |||| ||||    
T  33730103 acatctccatccaaaaccttaatgcattagctctatgggtcacctctcttttatatccaacatttaacccattcatag 33730180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 960 - 1001
Target Start/End: Original strand, 6677091 - 6677132
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    |||||| |||| |||||||||||||||| |||||||||||||    
T  6677091 acatcttcatctaaaaccttaagacatttggtatatgagtca 6677132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 962 - 1032
Target Start/End: Complemental strand, 27856234 - 27856164
Alignment:
Q  962 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 1032  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  27856234 atctccacccaaaactttaaggcattaggtatatgagccacctctcttatatatccaacattttacccatt 27856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 954 - 1037
Target Start/End: Original strand, 28296072 - 28296155
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 1037  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| ||||| | ||||||| || ||| ||||||| |||| ||||    
T  28296072 gacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcatag 28296155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 977 - 1024
Target Start/End: Original strand, 18415618 - 18415665
Alignment:
Q  977 cttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||    
T  18415618 cttaagacattaggtttatgagtctcctatcttatatatccaacattt 18415665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 962 - 1038
Target Start/End: Original strand, 15159178 - 15159254
Alignment:
Q  962 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatagc 1038  Q
    ||||||| ||||||| | || ||||||| |||||||||||||| ||||||| ||  |||||||||  ||||||||||    
T  15159178 atctccacccaaaacttcaaaacattagatatatgagtcacatctcttatacatgtaacattttatccatttatagc 15159254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 962 - 1032
Target Start/End: Original strand, 21488819 - 21488889
Alignment:
Q  962 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 1032  Q
    ||||||| | |||| |||||||||| | || || | ||||||| |||||||||||||||||||||| ||||    
T  21488819 atctccaccaaaaatcttaagacatcaagtttaagggtcacatctcttatatatccaacattttactcatt 21488889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 952 - 1001
Target Start/End: Original strand, 19263309 - 19263358
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  19263309 ttgacaccacatctccatcctaaaccttaagacattaggtatatgagtca 19263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 952 - 995
Target Start/End: Complemental strand, 38291900 - 38291857
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatat 995  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38291900 ttgacacgacatcttcatccaaaaccttaagacattaggtatat 38291857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 960 - 1025
Target Start/End: Complemental strand, 5073089 - 5073024
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 1025  Q
    ||||||||| ||||||||||||| ||||| ||||||||| | | | ||||||||||||||||||||    
T  5073089 acatctccacccaaaaccttaaggcattacgtatatgagacgcctctcttatatatccaacatttt 5073024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 985 - 1034
Target Start/End: Complemental strand, 2372923 - 2372874
Alignment:
Q  985 attaggtatatgagtcacatatcttatatatccaacattttacacattta 1034  Q
    |||| |||||||||||||||||||||||||||||||| | ||| ||||||    
T  2372923 attatgtatatgagtcacatatcttatatatccaacaatatacccattta 2372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 972 - 1037
Target Start/End: Original strand, 1418035 - 1418100
Alignment:
Q  972 aaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 1037  Q
    ||||| |||| ||||| | ||||||| ||| ||||||||||||||||| ||||||| |||| ||||    
T  1418035 aaaactttaaaacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatag 1418100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 952 - 1001
Target Start/End: Complemental strand, 50484 - 50435
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  50484 ttgacaccacatctccatcccaaaccttaagacattaggtatatgagtca 50435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 960 - 1021
Target Start/End: Original strand, 42059846 - 42059907
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaaca 1021  Q
    ||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||| ||||    
T  42059846 acatctccatccaaaaccttaagacattaggtataagtgtcccctctcttatatatcaaaca 42059907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 960 - 1019
Target Start/End: Original strand, 43978626 - 43978685
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaa 1019  Q
    ||||||||| ||||||||||||| || |||||||||||||| | | ||||||||||||||    
T  43978626 acatctccacccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaa 43978685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 962 - 1015
Target Start/End: Complemental strand, 43407733 - 43407680
Alignment:
Q  962 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatat 1015  Q
    ||||||| ||||||||||| | ||||||||||||||||||| | ||||||||||    
T  43407733 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatat 43407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 651 - 714
Target Start/End: Original strand, 18721220 - 18721284
Alignment:
Q  651 taaattaataattaaaaacta-tgaaatctcattaaaataggaacaacaccagtacaatagaaat 714  Q
    ||||||| |||||||||| || | ||||||||||||||||||||||||  || ||||||||||||    
T  18721220 taaattattaattaaaaaatagttaaatctcattaaaataggaacaacctcactacaatagaaat 18721284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 962 - 1026
Target Start/End: Complemental strand, 37626706 - 37626642
Alignment:
Q  962 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttta 1026  Q
    ||||||| | |||| ||||||||||||||||||||  | || | |||||||||||||||||||||    
T  37626706 atctccacctaaaatcttaagacattaggtatatgtatgacctctcttatatatccaacatttta 37626642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 954 - 1001
Target Start/End: Complemental strand, 15863196 - 15863149
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    |||||||| ||||||| |||||||||||||||||| ||||| ||||||    
T  15863196 gacacgacgtctccattcaaaaccttaagacattaagtatacgagtca 15863149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 990 - 1032
Target Start/End: Complemental strand, 28979077 - 28979035
Alignment:
Q  990 gtatatgagtcacatatcttatatatccaacattttacacatt 1032  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  28979077 gtatatgagtcacctctcttatatatccaatattttacacatt 28979035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 955 - 1016
Target Start/End: Complemental strand, 23162016 - 23161955
Alignment:
Q  955 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatc 1016  Q
    |||| ||||||||| |||||| |||||| |||  |||||||||||||| | |||||||||||    
T  23162016 acaccacatctccacccaaaatcttaaggcatcgggtatatgagtcacctctcttatatatc 23161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 955 - 1024
Target Start/End: Complemental strand, 19548256 - 19548187
Alignment:
Q  955 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    |||| ||||||||| |||||||||||||||||||| |||||| ||| | | |||||||||||||||||||    
T  19548256 acaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 941 - 1024
Target Start/End: Original strand, 8252621 - 8252704
Alignment:
Q  941 cataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||| |||||  ||||| ||||||||||||||||| ||||| | ||||||||| |||| || | |||||||||||||||||||    
T  8252621 cataagagagggcgacaccacatctccatccaaaactttaaggcgttaggtatacgagttacctctcttatatatccaacattt 8252704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 960 - 1024
Target Start/End: Complemental strand, 10066638 - 10066574
Alignment:
Q  960 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||||||| |||||| |||||| |||||||||||||  || | |||||||||||||||||||||    
T  10066638 acatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 952 - 1024
Target Start/End: Complemental strand, 34217652 - 34217580
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||||| |||||||  ||||||||||||||   |||||||||| |||||| ||||||||||||||| |||||    
T  34217652 ttgacaccacatctcattccaaaaccttaaggagttaggtatataagtcacctatcttatatatccaccattt 34217580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 975 - 1026
Target Start/End: Original strand, 40732555 - 40732606
Alignment:
Q  975 accttaagacattaggtatatgagtcacatatcttatatatccaacatttta 1026  Q
    ||||||||||||||||||||| || ||| ||||||||||||| |||||||||    
T  40732555 accttaagacattaggtatataagccacttatcttatatatcaaacatttta 40732606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 952 - 995
Target Start/End: Complemental strand, 6467046 - 6467003
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatat 995  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||    
T  6467046 ttgacaccacatctccatccaaaaacttaagacattagttatat 6467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 952 - 1001
Target Start/End: Complemental strand, 20444233 - 20444184
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    ||||||| | |||| ||||| |||||||||| ||||||||||||||||||    
T  20444233 ttgacaccatatcttcatcctaaaccttaaggcattaggtatatgagtca 20444184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 952 - 1001
Target Start/End: Original strand, 193 - 242
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  193 ttgacaccacatctccatcctaaaccttaagacattagatatatgagtca 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 954 - 1023
Target Start/End: Complemental strand, 14221345 - 14221276
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 1023  Q
    ||||| |||||||||||||||||||||| ||||||| |  ||||||||| | ||||||| ||||||||||    
T  14221345 gacaccacatctccatccaaaaccttaatacattagattaatgagtcacctctcttataaatccaacatt 14221276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 968 - 1025
Target Start/End: Original strand, 28940816 - 28940873
Alignment:
Q  968 atccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 1025  Q
    |||||||| |||||||||||||||||| ||||| | | |||||||| |||||||||||    
T  28940816 atccaaaatcttaagacattaggtatacgagtctcttctcttatatgtccaacatttt 28940873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 977 - 1026
Target Start/End: Original strand, 33424561 - 33424610
Alignment:
Q  977 cttaagacattaggtatatgagtcacatatcttatatatccaacatttta 1026  Q
    ||||||||||| |||||||||||||||| ||||||||||| | |||||||    
T  33424561 cttaagacatttggtatatgagtcacatctcttatatatctatcatttta 33424610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 674 - 741
Target Start/End: Complemental strand, 28013557 - 28013490
Alignment:
Q  674 aaatctcattaaaataggaacaacaccagtacaatagaaatttaaatcattacttaaaaacttagtta 741  Q
    ||||||||||||||| | ||||||| || |||||||| ||||||| | |||| ||||||| |||||||    
T  28013557 aaatctcattaaaattgaaacaacatcattacaataggaatttaatttattaattaaaaaattagtta 28013490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 952 - 1001
Target Start/End: Original strand, 22681170 - 22681219
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 1001  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  22681170 ttgacaccacatctccaccctaaaccttaagacattaggtatatgagtca 22681219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 954 - 1024
Target Start/End: Original strand, 11307624 - 11307694
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||| ||| | | ||| |||||||||||||||    
T  11307624 gacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacattt 11307694  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 954 - 1024
Target Start/End: Original strand, 26986701 - 26986771
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 1024  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||| ||||  | ||| |||||| ||||||||    
T  26986701 gacaccacatctccatccaaaaccttaaggcattatgtatatgggtcatttttctaatatatacaacattt 26986771  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 963 - 1023
Target Start/End: Complemental strand, 21748308 - 21748248
Alignment:
Q  963 tctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 1023  Q
    |||||||||||||  ||||||||||||| ||||||||||| | | |||||||| |||||||    
T  21748308 tctccatccaaaattttaagacattaggcatatgagtcacgtcttttatatattcaacatt 21748248  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 952 - 995
Target Start/End: Original strand, 42756772 - 42756815
Alignment:
Q  952 ttgacacgacatctccatccaaaaccttaagacattaggtatat 995  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||    
T  42756772 ttgacaccacatcttcatccaaaaccttaagactttaggtatat 42756815  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 954 - 1016
Target Start/End: Original strand, 20090557 - 20090619
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatc 1016  Q
    |||||||| || |||||||||||| |||  |||||||||||| |||||| | |||||||||||    
T  20090557 gacacgacgtcgccatccaaaaccctaatgcattaggtatataagtcacctctcttatatatc 20090619  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 682 - 740
Target Start/End: Complemental strand, 26054827 - 26054769
Alignment:
Q  682 ttaaaataggaacaacaccagtacaatagaaatttaaatcattacttaaaaacttagtt 740  Q
    |||||||||||||||||||  || ||| ||||||||||| |||| ||||||| ||||||    
T  26054827 ttaaaataggaacaacaccgctataatggaaatttaaattattaattaaaaatttagtt 26054769  T

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Target: scaffold0548 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 954 - 1025
Target Start/End: Original strand, 4113 - 4184
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 1025  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||| ||| | | ||| ||||||||||||||||    
T  4113 gacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacatttt 4184  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 954 - 1025
Target Start/End: Complemental strand, 29136 - 29063
Alignment:
Q  954 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatat--ccaacatttt 1025  Q
    ||||| ||||||||| |||||| |||||||||| || |||||||||| | | ||||||||||  ||||||||||    
T  29136 gacaccacatctccacccaaaatcttaagacatcagatatatgagtcccctctcttatatatatccaacatttt 29063  T

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