View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_11 (Length: 608)
Name: NF12942_low_11
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 17 - 572
Target Start/End: Complemental strand, 40522960 - 40522405
Alignment:
| Q |
17 |
agaatgaaggggacatttggctattttgcacctgagtatgcaattgttgggagatcctctattgagtcagatgtcttcagtttcggcgtggttcttcttg |
116 |
Q |
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| T |
40522960 |
agaatgaaggggacatttggctattttgcacctgagtatgcaattgttgggagatcctctattgagtcagatgtcttcagtttcggcgtggttcttcttg |
40522861 |
T |
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| Q |
117 |
aacttatcagtggtcgccaaccaatccttaaatctgcaggcaaagaagaaagccttgttgtatgggtattgtaaatcaacctatgaaacacttgcacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40522860 |
aacttatcagtggtcgccaaccaatccttaaatctgcaggcaaagaagaaagccttgttgtatgggtattgtaaatcaacctatgaaacacttgcacatg |
40522761 |
T |
|
| Q |
217 |
cattgaaaacaacattgacattgacacgtagacataaattataatatgaaaaataagtgattaaatgtaactttacgagtgttgggcactcagacacacc |
316 |
Q |
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| T |
40522760 |
cattgaaaacaacattgacattgacacgtagacataaattataatatgaaaaataagtgattaaatgtaactttacgagtgttgggcactcagacacacc |
40522661 |
T |
|
| Q |
317 |
ttcaacttgtagtgtcagtgctatgtcgaaatcaacttatccattactacatttgttcacatttgaaggattttgttggctctcaactttgtgcactgac |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40522660 |
ttcaacttgcagtgtcagtgctatgtcgaaatcaacttatccattactacatttgttcacatttgaaggattttgttggctctcaactttgtgcactgac |
40522561 |
T |
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| Q |
417 |
tatgacagttannnnnnncttgagaagggtggtctttgtataatagctcagacatcctaaattgtannnnnnnnnaatgtgtcttattttccatttataa |
516 |
Q |
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| T |
40522560 |
tatgacagttatttttttcttgagaagggtggtctttgtataatagctcagacatcctaaattgtatttttttttaatgtgtcttattttccatttataa |
40522461 |
T |
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| Q |
517 |
actggaatttagatgactatgataattacatactttagtttgaacattgcatatag |
572 |
Q |
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| T |
40522460 |
actggaatttagatgactatgataattacatactttagtttgaacattgcatatag |
40522405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 21601974 - 21602141
Alignment:
| Q |
17 |
agaatgaaggggacatttggctattttgcacctgagtatgcaattgttgggagatcctctattgagtcagatgtcttcagtttcggcgtggttcttcttg |
116 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| ||| |||| ||| ||||| |||| ||||| ||||| ||||| || ||||||||||| | |
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| T |
21601974 |
agaatgcaagggacatttggctattttgcacctgagtatgcgattattggtagagcctctcttgaatcagacgtctttagttttggtgtggttcttctcg |
21602073 |
T |
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| Q |
117 |
aacttatcagtggtcgccaaccaatccttaaatctgcaggcaaagaagaaagccttgttgtatgggta |
184 |
Q |
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| ||||||| ||||| || || |||| |||| || | || |||||||||||||| ||| |||||||| |
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| T |
21602074 |
agcttatcacgggtcgacatcctatccataaaactaccggaaaagaagaaagcctcgttatatgggta |
21602141 |
T |
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