View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_12 (Length: 592)
Name: NF12942_low_12
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 5 - 577
Target Start/End: Original strand, 44185752 - 44186322
Alignment:
| Q |
5 |
atggacatcatcatgtaaatgtgatattt-atttccttgttgaaattaaatggtactaacctaaaaat-gtattttgtgctctctctttatatctcctta |
102 |
Q |
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| T |
44185752 |
atggacaccgtcatgtaaatgtgatattttatttccttgttgaaattaaatggtactaacctaaaaattgtattttgtgctct--ctttatatctcttta |
44185849 |
T |
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| Q |
103 |
tctctatctcttttggtttattatttagcatcgttcagaagttttgtctgaagagaagctttagttaaggatattgctttcagcagcccaaaactgaaca |
202 |
Q |
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| T |
44185850 |
tctctatctcttttggtttattatttagcattgttcagaagttttgtctgaagagaagctttagttaaggatattgctttcagcagcccaaaactgaaca |
44185949 |
T |
|
| Q |
203 |
atgttcacaaaatgaatgttcacaatttacctaaggtctaaatccctatgccacaatattaaaacagtattagggaaaataactcattaatctatgtgca |
302 |
Q |
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| T |
44185950 |
atgttcacaaaatgaatgttcacaagttacctaaggtctaaatccctatgccacaatattaaaacagtattagggaaaatgactcattaatctatgtgca |
44186049 |
T |
|
| Q |
303 |
tatagattggacatatatttgcatattggaaaacaaaatggttttacaatcttgtgatgtggactgaatatctcatcacatctaaacaagttgcagctac |
402 |
Q |
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| T |
44186050 |
tatagattggacatatatttgcatattggaaaacaaaatggttttacaatcttgtgatgtggactgaatatctcatcacatctaaacaagttgcagctac |
44186149 |
T |
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| Q |
403 |
acaacatacttcgcaagtctatgtatattttagtacctatttccaatgaatgatagataacaagctaacaacatatacctatactccatgcaactaaata |
502 |
Q |
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| T |
44186150 |
acaacatacttcgcaagtctatgtatattttagtacctatttccaatgaatgatagataacaagctaacaacatatacc--tactccatgcaactaaata |
44186247 |
T |
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| Q |
503 |
tccacgctcaaatatgcacactttgaaaaaacagtcttaatctccaaataattaacacaaatacaagatagaaat |
577 |
Q |
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| T |
44186248 |
tccacgctcaaatatgcacactttgaaaaaacagtcttaatctccaaataattaacacaaatacaagatagaaat |
44186322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 44191953 - 44192003
Alignment:
| Q |
215 |
tgaatgttcacaatttacctaaggtctaaatccctatgccacaatattaaa |
265 |
Q |
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| T |
44191953 |
tgaatgttcacaagttacctaaagtctaaatccctatgccacaatattaaa |
44192003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 40397620 - 40397673
Alignment:
| Q |
423 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacat |
476 |
Q |
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| T |
40397620 |
atgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacat |
40397673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 19162652 - 19162706
Alignment:
| Q |
423 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacata |
477 |
Q |
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| T |
19162652 |
atgtatattttagtacctacgtccaatcaatgatagataacaagctaacaacata |
19162706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 573
Target Start/End: Complemental strand, 18985431 - 18985364
Alignment:
| Q |
508 |
gctcaaatatgcacactttgaaaaa--acagtcttaatctccaaataattaacacaaatacaagatag |
573 |
Q |
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| T |
18985431 |
gctcaaatttgcacacattggaaaagcacagttttaatctccaattaattaacacaaatacaagatag |
18985364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 30742357 - 30742318
Alignment:
| Q |
359 |
atgtggactgaatatctcatcacatctaaacaagttgcag |
398 |
Q |
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| T |
30742357 |
atgtggactgaatatctcatcacttttaaacaagttgcag |
30742318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 412
Target Start/End: Complemental strand, 27186054 - 27186025
Alignment:
| Q |
383 |
tctaaacaagttgcagctacacaacatact |
412 |
Q |
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| T |
27186054 |
tctaaacaagttgcagctacacaacatact |
27186025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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