View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_14 (Length: 571)
Name: NF12942_low_14
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 24908496 - 24909049
Alignment:
| Q |
1 |
cggctttctttgtaagctgtcttagaagcgcatattctggcgcaagatatcccctgctcagataaatgttaaacaaagattaaactatcaagcgataact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24908496 |
cggctttctttgtaagctgtcttagaagcgcatattctggcgcaagatatcccctgctcagataaatgttaaacaaagattaaactatcaagcgataact |
24908595 |
T |
|
| Q |
101 |
gaaaagcaaaattctggtaccagtcgcataatatgatatatattaatgtaaaattatgcatttatacttacattgttccggcaactcgagtactaacatg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24908596 |
gaaaagcaaaattctggtaccagtcacataatatgatatatattaatgtaaaattatgcatttatacttacattgttccggcaactcgagtactaacatg |
24908695 |
T |
|
| Q |
201 |
tgtgacattgtcagggaaaagttttgcaagaccaaaatcaccaatttttggatggaaattctcatccaacaatatgttgctggctttgatatctctgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24908696 |
tgtgacattgtcagggaaaagttttgcaagaccaaaatcaccaatttttggatggaaattctcatccaacaatatgttgctggctttgatatctctgtga |
24908795 |
T |
|
| Q |
301 |
acaatgtttggctgagcctcttcgtgaagaaagcttagacccgaagctgtaccacggcaaatagtaacccttttttgccaatccagaggaacacatttac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
24908796 |
acaatgtttggctgagcctcttcgtgaagaaagcttagacccgaagctgtaccacggcaaataatagcccttttttgccaatccagaggaacacatttac |
24908895 |
T |
|
| Q |
401 |
tttttgaacctgttaaaaaaggaaagtttaactacgaagataataactgttttcaaaagtggaaagttttaaatggccatttaatttagataatgatgat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24908896 |
tttttgaacctgttaaaaaaggaaagtttaactacgaagataataactgttttcaaaagtggaaagttttaaatggccatttaatttagataatgatgat |
24908995 |
T |
|
| Q |
501 |
ataaaagtacaaatcacctaataaagaacttgcgaggctattattctcgagaaa |
554 |
Q |
| |
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| T |
24908996 |
ataaaagtacaaatcacctaataaagaacttgtgaggctattattctcgagaaa |
24909049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 424 - 554
Target Start/End: Original strand, 24894273 - 24894404
Alignment:
| Q |
424 |
aagtttaactacgaagataataactgttttcaaaagtggaaagttttaaatgg-ccatttaatttagataatgatgatataaaagtacaaatcacctaat |
522 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || |||||||| || || || |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
24894273 |
aagtttaactacgaagataataactgttttcaaaattgaaaagttttgaacgggccttttaatttagataatgatgatatagaagtacaaattacctaac |
24894372 |
T |
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| Q |
523 |
aaagaacttgcgaggctattattctcgagaaa |
554 |
Q |
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||||||||||| ||||||||||||| |||||| |
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| T |
24894373 |
aaagaacttgcaaggctattattcttgagaaa |
24894404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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