View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_15 (Length: 552)

Name: NF12942_low_15
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_15
NF12942_low_15
[»] chr3 (5 HSPs)
chr3 (235-478)||(49016123-49016365)
chr3 (289-478)||(26250498-26250687)
chr3 (151-236)||(39666035-39666120)
chr3 (151-233)||(43615085-43615167)
chr3 (358-456)||(35492413-35492513)
[»] chr7 (4 HSPs)
chr7 (235-479)||(42011308-42011551)
chr7 (151-230)||(28211217-28211296)
chr7 (151-233)||(14648031-14648113)
chr7 (5-94)||(28211353-28211457)
[»] chr4 (11 HSPs)
chr4 (235-478)||(48512634-48512876)
chr4 (235-473)||(50499783-50500020)
chr4 (235-478)||(52489269-52489511)
chr4 (246-479)||(31417204-31417434)
chr4 (235-478)||(29819423-29819670)
chr4 (235-478)||(48474109-48474351)
chr4 (235-476)||(53409088-53409334)
chr4 (246-478)||(42477413-42477645)
chr4 (246-478)||(37385007-37385234)
chr4 (397-492)||(20718120-20718215)
chr4 (155-197)||(54804373-54804415)
[»] chr1 (11 HSPs)
chr1 (246-478)||(3154459-3154691)
chr1 (252-478)||(6850840-6851066)
chr1 (246-484)||(29920348-29920585)
chr1 (235-478)||(5055097-5055338)
chr1 (151-233)||(8142796-8142878)
chr1 (44-94)||(8142935-8142985)
chr1 (5-52)||(8142992-8143039)
chr1 (434-484)||(29919219-29919269)
chr1 (434-484)||(29920128-29920178)
chr1 (434-484)||(29920238-29920288)
chr1 (518-552)||(42886525-42886559)
[»] chr6 (2 HSPs)
chr6 (235-471)||(27336118-27336353)
chr6 (235-471)||(27396858-27397093)
[»] chr5 (6 HSPs)
chr5 (235-462)||(32771246-32771471)
chr5 (358-480)||(26305967-26306089)
chr5 (151-221)||(29832896-29832966)
chr5 (151-233)||(18652159-18652241)
chr5 (365-456)||(29538972-29539065)
chr5 (410-450)||(17864592-17864632)
[»] scaffold0006 (1 HSPs)
scaffold0006 (250-478)||(282169-282398)
[»] chr8 (6 HSPs)
chr8 (235-478)||(9233512-9233757)
chr8 (151-233)||(30830445-30830527)
chr8 (151-233)||(6285242-6285324)
chr8 (44-94)||(30830338-30830388)
chr8 (5-52)||(30830284-30830331)
chr8 (518-548)||(43962878-43962908)
[»] chr2 (2 HSPs)
chr2 (235-338)||(34025410-34025512)
chr2 (388-456)||(34025547-34025615)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 235 - 478
Target Start/End: Original strand, 49016123 - 49016365
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49016123 atatgttaaatt-attaaattctaaatattgatcgaaaatgatgggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaa 49016221  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    |||||||||||| |||| |||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  49016222 ggcaggaaaatattttggaaagagtaaatgaaataattagacgtgtgaggtgcattatgttattgtgcatacatataatccaatggttataaatattggt 49016321  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
     ||||||||||||||| ||||| ||||| |||||||||||||||    
T  49016322 tcattatggaccaatagttacacaggtccaagctaaatgccacc 49016365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 289 - 478
Target Start/End: Complemental strand, 26250687 - 26250498
Alignment:
Q  289 gaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgca 388  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  26250687 gaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaaagcaggaaaatagtttggaaagagtaaaggaaataattagacgtgtgaggtgca 26250588  T
Q  389 ttatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    |||| || ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || || | ||| |||| ||||||||||    
T  26250587 ttatattattgtgcatatatataatctaatggttataaatattggtccattatggaccaatacttgcataagtccaagcaaaatgccacc 26250498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 39666035 - 39666120
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagcaaat 236  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  39666035 tctgatccgttgaaatttgaccctgccacatgtcacacatcggttacattaactggaaactggagcaattttgtactggagcaaat 39666120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 43615167 - 43615085
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagca 233  Q
    ||||||||||| |||| ||||||||||||||||||  |||| ||||||||||  || |||||||| ||||||||| |||||||    
T  43615167 tctgatccgttaaaatctgaccctgccacatgtcacgcatcagttacattaactgggaactggagtaattttgtactggagca 43615085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 456
Target Start/End: Original strand, 35492413 - 35492513
Alignment:
Q  358 gtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatg--gttataaatattggtccattatggaccaatatttac 455  Q
    ||||||||||||||||||  ||||||||  ||| |||| |||||| ||||| ||||||||||    ||||||||| | || |||||||||||||| ||||    
T  35492413 gtaaaggaaataattagatgtgtgaggtatattgtgttattgtgcttacatataatccaatgactatataaatatagatctattatggaccaatacttac 35492512  T
Q  456 a 456  Q
    |    
T  35492513 a 35492513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 235 - 479
Target Start/End: Original strand, 42011308 - 42011551
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  42011308 atatgttaaatt-attaaattctaaatattgatcgaaaacgatgggtttttattgaaaataattgaagattgaatgttgaaattacagaaaaaaaaagaa 42011406  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  42011407 ggcaggaaaatagtttggaaagagtaaaagaaataattagacgtgagaggtgcattatgttattgtgcatacatataatccaatggttataaatattggt 42011506  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaatgccacca 479  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||||    
T  42011507 ccattatggaccaatacttatacaggtccaagctaaatgccacca 42011551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 28211296 - 28211217
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatgga 230  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  28211296 tctgatccgttaaaatttgaccctgccacatgtcacacatcggttacattaacaggaaattggagcaattttgtaatgga 28211217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 14648113 - 14648031
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagca 233  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||  || |||||||||||||||||| |||||||    
T  14648113 tctgatccgttgaaatctgaccctgccacatgtcacacatcagttacattaactgggaactggagcaattttgtactggagca 14648031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 28211457 - 28211353
Alignment:
Q  5 gagagagaagaacggcggcgtaccaacgaagaagatgaaggagag---------------gagtgacgacggagaggagtgaagaaggagagcagaaaca 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||     
T  28211457 gagagagaagaacggcggcgtactaacgaagaagatgaaggagaggagaggggcggagaagagtgacgacggagaggagtgaagaaggagagcagaaacg 28211358  T
Q  90 tgcac 94  Q
    |||||    
T  28211357 tgcac 28211353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 235 - 478
Target Start/End: Complemental strand, 48512876 - 48512634
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  48512876 atatgttaaatt-attaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagac 48512778  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    || ||||||||||||||||||| |||||| ||||||||| || |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  48512777 ggtaggaaaatagtttgaaaagagtaaagaaaataattaaacttgtgaggtgcattatgttattgtgcatacatataattcaatggttataaatattggt 48512678  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    |||||||||||||||| ||||| ||||| |||||||||| ||||    
T  48512677 ccattatggaccaatacttacacaggtccaagctaaatgtcacc 48512634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 235 - 473
Target Start/End: Complemental strand, 50500020 - 50499783
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  50500020 atatgttaaatt-attaaattctaaatattgatcgaaaacgatggatttttattaaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaa 50499922  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  50499921 ggcaggaaaatagtttgaaaagagtaaagaaaataattagacgtgtgaggtgcattatgttattgtgcatacatataattcaatggttataaatattggt 50499822  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaatg 473  Q
      |||||||||||||| ||||| ||||| ||||||||||    
T  50499821 ttattatggaccaatacttacacaggtccaagctaaatg 50499783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 235 - 478
Target Start/End: Original strand, 52489269 - 52489511
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaa-aga 333  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||    
T  52489269 atatgttaaatt-attaa-ttctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgagtgttgaaattacagaaataaaaaaga 52489366  T
Q  334 aggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattgg 433  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||  |||||||||||||     
T  52489367 aggcaggaaaatagtttgaaaagagtaaaggaaataattagacgtgtgaggtgcattatgttattgtgcacacatataatccaacagttataaatattga 52489466  T
Q  434 tccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||    
T  52489467 tccattatggaccaatacttacacaggtccaagctaaatgccacc 52489511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 246 - 479
Target Start/End: Original strand, 31417204 - 31417434
Alignment:
Q  246 ttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaat 345  Q
    ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||    
T  31417204 ttattaaattctaaatattgatcgaaaattataggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaag---gcaggaaaat 31417300  T
Q  346 agtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggac 445  Q
    |||||| |||| |||||||||||| |||||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||    
T  31417301 agtttggaaagagtaaaggaaatagttagacgtatgaggtgcattatgttattgtgcatacatataatccaatggttataaatattggtccattatagac 31417400  T
Q  446 caatatttacaaaggtcaaagctaaatgccacca 479  Q
    ||||| ||||| |  || ||||||||||||||||    
T  31417401 caatacttacacatatccaagctaaatgccacca 31417434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 235 - 478
Target Start/End: Complemental strand, 29819670 - 29819423
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  29819670 atatgttaaatt-attaaattctaaatattgatcgaaaacgatgagtttttattgaaaacaattgaagattgaatgttgaaattacaaaaaaaaaaaaaa 29819572  T
Q  335 -----ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaata 429  Q
         || |||||||||||||  |||   |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  29819571 aaaaaggtaggaaaatagtttagaaaaaataaaggaaataattagacgtgtgaggtgcattatgttattgtgcatacatataatccaatggttataaata 29819472  T
Q  430 ttggtccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||| ||||||||||||||  ||||| ||||| |||||||||||||||    
T  29819471 ttggttcattatggaccaatgcttacacaggtccaagctaaatgccacc 29819423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 235 - 478
Target Start/End: Original strand, 48474109 - 48474351
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||    
T  48474109 atatgttaaatt-attaaattttaaatattgatcgaaaatgatgggtttttattaaaaacaattgaagattgaatgttggaattatagaaagaaaaagaa 48474207  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    || |  |||||| ||||||||| | ||||||||||||||||| |||||||||||||||||| ||||| ||| || |||| ||||||||||||||||||||    
T  48474208 ggtaaaaaaataatttgaaaagagcaaaggaaataattagacgtgtgaggtgcattatgttattgtgtatatatataattcaatggttataaatattggt 48474307  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||||| |||||||||||||| | ||| |||||||||||||||    
T  48474308 ccattattgaccaatatttacacatgtccaagctaaatgccacc 48474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 235 - 476
Target Start/End: Complemental strand, 53409334 - 53409088
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacac------aaagaa 328  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||    
T  53409334 atatgttaaatt-attaaattctaaatattgattgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacaagagagaaaaaaa 53409236  T
Q  329 aaagaaggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaat 428  Q
    |||||||||| |||||||||||  ||||  |||| |||||||||| || |||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  53409235 aaagaaggcaagaaaatagtttagaaagaataaaagaaataattaaacgtgtgaggtgcattatgttattgtgcatatatataatccaatggttataaat 53409136  T
Q  429 attggtccattatggaccaatatttacaaaggtcaaagctaaatgcca 476  Q
    ||||||||||||| |||||||| ||||| ||||| |||||||||||||    
T  53409135 attggtccattatagaccaatacttacataggtccaagctaaatgcca 53409088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 246 - 478
Target Start/End: Complemental strand, 42477645 - 42477413
Alignment:
Q  246 ttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaat 345  Q
    |||||||||||||||||||||| |||||||||| ||||  ||||| |||||||||||||||||| || |||||||| ||||| | |||||||| |||| |    
T  42477645 ttattaaattctaaatattgattgaaaacgatgagtttaaattgataacaattgaagattgaatattaaaattacagaaagagagagaaggcaagaaact 42477546  T
Q  346 agtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggac 445  Q
    | |||  | || |||||| |||||||||||  ||||||||| ||| |||| |||||| || || ||||||||||||||||||||||||||||||||||||    
T  42477545 attttagagagagtaaagaaaataattagatgtgtgaggtgtattgtgttattgtgcttatatataatccaatggttataaatattggtccattatggac 42477446  T
Q  446 caatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||||||||| ||||| |||||||||| ||||    
T  42477445 caatatttacacaggtccaagctaaatgacacc 42477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 246 - 478
Target Start/End: Complemental strand, 37385234 - 37385007
Alignment:
Q  246 ttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaat 345  Q
    |||||||||||||||||||||| |||||||||| ||||  ||||||||||| |    ||||||| || |||||||| ||||| | |||||||| |||| |    
T  37385234 ttattaaattctaaatattgattgaaaacgatgagtttaaattgaaaacaaat----attgaatattaaaattacataaagagagagaaggcaagaaact 37385139  T
Q  346 agtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggac 445  Q
    | ||| || || |||||  ||||||||| | ||||||| |  ||| |||  |||||| || || |||| ||||| |||||||||||||||||||||||||    
T  37385138 attttaaagagagtaaaa-aaataattaaatatgtgagatatattgtgtcattgtgcttatatataattcaatgattataaatattggtccattatggac 37385040  T
Q  446 caatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||||||||| ||||| |||||||||| ||||    
T  37385039 caatatttacacaggtccaagctaaatgacacc 37385007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 492
Target Start/End: Original strand, 20718120 - 20718215
Alignment:
Q  397 ttgtgcatacatgtaatccaatggttataaatattggtccattatggaccaatatttacaaaggtcaaagctaaatgccaccacaaacatatactt 492  Q
    |||||| |||||  |||||||||| ||||||||||||| ||||||||| ||||| ||||| ||||  | |||||||| |||   ||||||||||||    
T  20718120 ttgtgcttacatacaatccaatggctataaatattggttcattatggatcaatacttacacaggtttaggctaaatggcactctaaacatatactt 20718215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 54804373 - 54804415
Alignment:
Q  155 atccgttgaaatttgaccctgccacatgtcatacatcggttac 197  Q
    |||||||||||| |||||||||||||| ||| |||||||||||    
T  54804373 atccgttgaaatctgaccctgccacatatcacacatcggttac 54804415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 246 - 478
Target Start/End: Complemental strand, 3154691 - 3154459
Alignment:
Q  246 ttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||    
T  3154691 ttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaaggcagaaacat 3154592  T
Q  346 agtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggac 445  Q
    | |||| |||  ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  3154591 attttggaaaaagtaaaggaaataattagacgtgtgaggtgcattatgttattgtgcatacatataatccagtggttataaatattggtccattatggac 3154492  T
Q  446 caatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||| ||||||| ||| |||||||||||||||    
T  3154491 caatacttacaaatgtccaagctaaatgccacc 3154459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 252 - 478
Target Start/End: Original strand, 6850840 - 6851066
Alignment:
Q  252 aattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaatagtttg 351  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  6850840 aattctaaatattgatcgaaaacgatgagtttttattgaaaataattgaagattgaatgttgaaattacagaaagaaaaagaaggcagaaaaatagttta 6850939  T
Q  352 aaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggaccaatat 451  Q
    ||||| |||||||||||||||| || |||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||||     
T  6850940 aaaagagtaaaggaaataattaaacgtgtgaggtgcattatgttattgtgcacacgtataatccaatggttataaatattggtccattatggaccaatac 6851039  T
Q  452 ttacaaaggtcaaagctaaatgccacc 478  Q
    ||||| ||||| |||||||||||||||    
T  6851040 ttacacaggtccaagctaaatgccacc 6851066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 246 - 484
Target Start/End: Complemental strand, 29920585 - 29920348
Alignment:
Q  246 ttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaat 345  Q
    |||||||||||||||||||||| |||||||||| ||||  |||||||||||||||||||||||| ||||||||||| ||||| | |||||||| |||| |    
T  29920585 ttattaaattctaaatattgattgaaaacgatgagtttaaattgaaaacaattgaagattgaatattgaaattacagaaagagagagaaggcaagaaact 29920486  T
Q  346 agtttgaaaagggt-aaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatgga 444  Q
    | |||  | || || |||  ||| |||||||  ||||||||| |||||||| |||||| || || ||||| ||||||||||||||||| |||||||||||    
T  29920485 atttt--agagagtaaaaaaaaaaaattagatgtgtgaggtgtattatgttattgtgcttatatataatcgaatggttataaatattgatccattatgga 29920388  T
Q  445 ccaatatttacaaaggtcaaagctaaatgccaccacaaac 484  Q
    |||||||||||| || || |||||||||| |||| |||||    
T  29920387 ccaatatttacatagatccaagctaaatggcacctcaaac 29920348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 235 - 478
Target Start/End: Complemental strand, 5055338 - 5055097
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||| | ||||    
T  5055338 atatgttaaatt-attaaactctaaatattgattgaaaacgatggattttcattgaaaacaattgaagattgaatgctgaaattacagaaagagagagaa 5055240  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    |||| | ||||| |||  | ||  ||||| ||||| |||||  | ||||||  ||| |||| |||||| ||||| ||||||||||  |||||||||||||    
T  5055239 ggcaaggaaata-tttagagagaataaagaaaatatttagatgtttgaggtatattgtgttattgtgcttacatataatccaatgactataaatattggt 5055141  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    ||||||||||| || | ||||| | ||| | |||||||| ||||    
T  5055140 ccattatggactaacacttacataagtccaggctaaatgacacc 5055097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 8142878 - 8142796
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagca 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8142878 tctgatccgttgaaatttgaccctgccacatgtcacacatcggttacattaacaggaaactggagcaattttgtaatggagca 8142796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 8142985 - 8142935
Alignment:
Q  44 ggagaggagtgacgacggagaggagtgaagaaggagagcagaaacatgcac 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8142985 ggagaggagtgacgacggagaggagtgaagaaggagagcagaaacgtgcac 8142935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 8143039 - 8142992
Alignment:
Q  5 gagagagaagaacggcggcgtaccaacgaagaagatgaaggagaggag 52  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  8143039 gagagagaagaacggcgacgtactaacgaagaagatgaaggagaggag 8142992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 29919269 - 29919219
Alignment:
Q  434 tccattatggaccaatatttacaaaggtcaaagctaaatgccaccacaaac 484  Q
    ||||||||||||||||||||||| || || |||||||||| |||| |||||    
T  29919269 tccattatggaccaatatttacatagatccaagctaaatggcacctcaaac 29919219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 29920178 - 29920128
Alignment:
Q  434 tccattatggaccaatatttacaaaggtcaaagctaaatgccaccacaaac 484  Q
    ||||||||||||||||||||||| || || |||||||||| |||| |||||    
T  29920178 tccattatggaccaatatttacatagatccaagctaaatggcacctcaaac 29920128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 29920288 - 29920238
Alignment:
Q  434 tccattatggaccaatatttacaaaggtcaaagctaaatgccaccacaaac 484  Q
    ||||||||||||||||||||||| || || |||||||||| |||| |||||    
T  29920288 tccattatggaccaatatttacatagatccaagctaaatggcacctcaaac 29920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 552
Target Start/End: Complemental strand, 42886559 - 42886525
Alignment:
Q  518 ctgattggtgatgagaagaagaaccggtgtttaac 552  Q
    ||||||||||||||||||||||||||| |||||||    
T  42886559 ctgattggtgatgagaagaagaaccggcgtttaac 42886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 235 - 471
Target Start/End: Original strand, 27336118 - 27336353
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27336118 atatgttaaatt-attaaattctaaatattgatcgaaaatgatgggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaa 27336216  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    ||||| |||||| ||| ||||| |||||| ||||||| |||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  27336217 ggcagaaaaatattttaaaaagagtaaagaaaataatcagacatgtaaagtgcattatgttattgtgcatacatataatccaatggttataaatattggt 27336316  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaa 471  Q
    |||||||| ||||||| ||||| ||||| ||||||||    
T  27336317 ccattatgaaccaatacttacataggtccaagctaaa 27336353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 235 - 471
Target Start/End: Original strand, 27396858 - 27397093
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27396858 atatgttaaatt-attaaattctaaatattgatcgaaaatgatgggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaa 27396956  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    ||||| |||||| ||| ||||| |||||| ||||||| |||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  27396957 ggcagaaaaatattttaaaaagagtaaagaaaataatcagacatgtaaagtgcattatgttattgtgcatacatataatccaatggttataaatattggt 27397056  T
Q  435 ccattatggaccaatatttacaaaggtcaaagctaaa 471  Q
    |||||||| ||||||| ||||| ||||| ||||||||    
T  27397057 ccattatgaaccaatacttacataggtccaagctaaa 27397093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 235 - 462
Target Start/End: Complemental strand, 32771471 - 32771246
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32771471 atatgttaaatt-attaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaa 32771373  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    ||||||||||||||||| |||| |||||||||||||||| || ||||| |||||||||||| |||||||||||| ||||| |||  ||||||||||||||    
T  32771372 ggcaggaaaatagtttggaaagagtaaaggaaataattaaacgtgtgatgtgcattatgttattgtgcatacatataatctaat-attataaatattggt 32771274  T
Q  435 ccattatggaccaatatttacaaaggtc 462  Q
    |||||||||||||||| ||||| |||||    
T  32771273 ccattatggaccaatacttacacaggtc 32771246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 358 - 480
Target Start/End: Complemental strand, 26306089 - 26305967
Alignment:
Q  358 gtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggaccaatatttacaa 457  Q
    |||||| |||||||||||  ||||||||  ||| |||| |||||| ||||| ||||||||||  ||||||||||| ||||||||||||||||| |||||     
T  26306089 gtaaagaaaataattagatgtgtgaggtatattgtgttattgtgcttacatataatccaatgactataaatattgatccattatggaccaatacttacac 26305990  T
Q  458 aggtcaaagctaaatgccaccac 480  Q
    | ||| | |||||||| ||||||    
T  26305989 aagtccaggctaaatggcaccac 26305967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 29832966 - 29832896
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattt 221  Q
    |||||||||||||||| | |||||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  29832966 tctgatccgttgaaatctcaccctgccacatgtcacacatcagttacattaacaggaaactggagcaattt 29832896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 18652159 - 18652241
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagca 233  Q
    |||||| ||||||||||||||||||||||||||||  |||| ||||||||||   | |||||||||||||||||| |||||||    
T  18652159 tctgattcgttgaaatttgaccctgccacatgtcacgcatcagttacattaactaggaactggagcaattttgtactggagca 18652241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 29538972 - 29539065
Alignment:
Q  365 aaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaa--tattggtccattatggaccaatatttaca 456  Q
    |||||||||||  ||||||||| ||| |||| |||||| | ||| ||||||||||| ||||||  ||||||||||||||||||||||| |||||    
T  29538972 aaataattagatgtgtgaggtgtattgtgttattgtgcttgcatataatccaatggctataaaaatattggtccattatggaccaatacttaca 29539065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 17864632 - 17864592
Alignment:
Q  410 taatccaatggttataaatattggtccattatggaccaata 450  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  17864632 taatccaatggctataaattttgatccattatggaccaata 17864592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 250 - 478
Target Start/End: Complemental strand, 282398 - 282169
Alignment:
Q  250 taaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaaggcaggaaaatagtt 349  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||    
T  282398 taaattctaaatattgatcgaaaacgatgagtttttattgaaaacaattgaagattgaatgttgaaattacagaaagaaaaagaagacagaaaaatattt 282299  T
Q  350 tgaaaagggtaaaggaaat-aattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggaccaa 448  Q
    || |||| ||||| ||||| |||||||| ||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||| |||||| |||||    
T  282298 tggaaagagtaaaagaaataaattagacgtgtgaggtgcattatattattgtgcatacatataatctaatggttataaatattggtctattatgaaccaa 282199  T
Q  449 tatttacaaaggtcaaagctaaatgccacc 478  Q
    || ||||| ||||| |||||||||||||||    
T  282198 tacttacacaggtccaagctaaatgccacc 282169  T

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Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 235 - 478
Target Start/End: Original strand, 9233512 - 9233757
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  9233512 atatgttaaatt-attaa-ttctaaatattgatcgaaaacgatgagtttttattgaaa-caattgaatattgaatgttgaaattacagaaagaaaaagaa 9233608  T
Q  335 ggcaggaaaatagtttgaaaagggtaaaggaaataattagacatgtgaggtgcattatgttcttgtgcatacatgtaatccaatggttataaatattggt 434  Q
    | ||| ||||||||||  |||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  9233609 gacagaaaaatagttttgaaagagtaaaggaaataattagacgtgtgaggtgcattatgttattgtgcacacatataatccaatggttataaatattggt 9233708  T
Q  435 c-----cattatggaccaatatttacaaaggtcaaagctaaatgccacc 478  Q
    |      |||||||||||||| ||||| | ||| |||||||||||||||    
T  9233709 cgattatattatggaccaatacttacacaagtccaagctaaatgccacc 9233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 30830445 - 30830527
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagca 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30830445 tctgatccgttgaaatttgaccctgccacatgtcacacatcggttacattaataggaaactggagcaattttgtaatggagca 30830527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 6285324 - 6285242
Alignment:
Q  151 tctgatccgttgaaatttgaccctgccacatgtcatacatcggttacattaaaaggaaactggagcaattttgtaatggagca 233  Q
    |||||||||||||||| ||||||||||||||||||  |||| ||||||||||  || |||||||||||||||||| |||||||    
T  6285324 tctgatccgttgaaatctgaccctgccacatgtcacgcatcagttacattaactgggaactggagcaattttgtactggagca 6285242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 30830338 - 30830388
Alignment:
Q  44 ggagaggagtgacgacggagaggagtgaagaaggagagcagaaacatgcac 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30830338 ggagaggagtgacgacggagaggagtgaagaaggagagcagaaacgtgcac 30830388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 30830284 - 30830331
Alignment:
Q  5 gagagagaagaacggcggcgtaccaacgaagaagatgaaggagaggag 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30830284 gagagagaagaacggcggcgtactaacgaagaagatgaaggagaggag 30830331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 548
Target Start/End: Complemental strand, 43962908 - 43962878
Alignment:
Q  518 ctgattggtgatgagaagaagaaccggtgtt 548  Q
    |||||||||||||||||||||||||||||||    
T  43962908 ctgattggtgatgagaagaagaaccggtgtt 43962878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 34025410 - 34025512
Alignment:
Q  235 atatgttaaatttattaaattctaaatattgatcgaaaacgatgggtttttattgaaaacaattgaagattgaatgttgaaattacacaaagaaaaagaa 334  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||| |||| ||| |||||||||||| |||||||| |||||||||| ||||| ||||||    
T  34025410 atatgttaaatt-attaaactctaaatattgattgaaaacaatggattttcattaaaaacaattgaaaattgaatgctgaaattacagaaagagaaagaa 34025508  T
Q  335 ggca 338  Q
    ||||    
T  34025509 ggca 34025512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 34025547 - 34025615
Alignment:
Q  388 attatgttcttgtgcatacatgtaatccaatggttataaatattggtccattatggaccaatatttaca 456  Q
    ||| |||| |||||| || || ||||||||||  ||||||||||| ||||||||||||||||| |||||    
T  34025547 attgtgttattgtgcttagatataatccaatgactataaatattgatccattatggaccaatacttaca 34025615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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