View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_17 (Length: 526)
Name: NF12942_low_17
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 1441715 - 1441286
Alignment:
| Q |
1 |
acgttactcagtgtctgttagtttatggaattaatccttaatttgactacctgaatgtgaggatgattgttatatgctttattttttgtttaataatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1441715 |
acgttactcagtgtctgttagtttatggaattaatccttaatttgactacctgaatgtgaggatgattgttatatgctttattttttgtctaataatgaa |
1441616 |
T |
|
| Q |
101 |
caactaaagagaatttgagatgtttcagatgttgcacgcctgcatattttaagctattgttaaatcttagcattgaatgttacatttccggttgctctaa |
200 |
Q |
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| T |
1441615 |
caactaaagataatttgagatgtttcagatgttgcacgcctgcatattttaagctattgttaaatcttagcattgaatgttacatttccggttgctctaa |
1441516 |
T |
|
| Q |
201 |
gttttgggcttgtaaacttgtcaacaaagctgaaaagtaattattcttattatagcaacagagtttcctaatgatcaatttttatgatctgggttttatt |
300 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
1441515 |
gttttgggcttgtgaacttgtcaacaaaggtgaaaagtaattattcttattatagcaacagagtttcctaatgatcaattttcatgatgtgggttttatt |
1441416 |
T |
|
| Q |
301 |
tttgtgatggtttgatgatagtttttaatgtgccactgattattgtggaagtaactcagtccctattttcctaatttatatttatcttgcttatgaagcg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1441415 |
tttgtgatggtttgatgatagtttttaatgtgccactgattattgtggaagtaactcggtccctattttcctaatttatatttatcttgcttatgaagcg |
1441316 |
T |
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| Q |
401 |
caaggactcatcacataataacatgaaata |
430 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1441315 |
caaggactcatcacataataacatgaaata |
1441286 |
T |
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