View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_21 (Length: 490)
Name: NF12942_low_21
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 54 - 465
Target Start/End: Original strand, 35394049 - 35394460
Alignment:
| Q |
54 |
agaaaatagaaatgattggtagtgataat-aaatagtttctttcggtgcgactaaaaatgattggctctgcctttttattgaagttcaataacaaattta |
152 |
Q |
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| T |
35394049 |
agaaaatagaaatgattggtagtgataatcaaatagtttcttt-ggtgcgactaaaaatgattggctctgcctttttattaaagttcaa-aacaaattta |
35394146 |
T |
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| Q |
153 |
aacaatttatctcaagccaataactcgaatgtatttaagttctggtaaaattttcatgtttaaattaataatcaattaatacagtatatgc-atacaact |
251 |
Q |
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| T |
35394147 |
aacaatttatctcaagccaataactcgaatttatttaatttctggtaaaattttcatgtttaaattaataatcaattaatacagtatatgttatacaact |
35394246 |
T |
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| Q |
252 |
tctagtaataagttctaaattcgtgtcactattgcactattctcacagctctcaagtctcaagtaactcctaaaatccggtgacaactatagttgaggaa |
351 |
Q |
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| T |
35394247 |
tatagtaataagttctaaattcgtgtcactattgcactattctcacagctctcaagtctcaagtaactcctacaatccggtgacaactatagttgaggaa |
35394346 |
T |
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| Q |
352 |
gcctctccactccgttgaatttgatttcgtcatttcgatattaaagatcaagaccatactcatggatattcaaacctatcaatatatagcaagttccatt |
451 |
Q |
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| T |
35394347 |
gcctctccactccgttgaatttgatttcgtcatttcgatattaaagatcaagaccatactcatggatattcaaacctatcaatatatagcaagttccatt |
35394446 |
T |
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| Q |
452 |
tgcataggtatata |
465 |
Q |
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| T |
35394447 |
tgcataggtatata |
35394460 |
T |
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Back To:
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 26153280 - 26153251
Alignment:
| Q |
3 |
aatagttaccattcgtctaaattcgtgcaa |
32 |
Q |
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| T |
26153280 |
aatagttaccattcgtctaaattcgtgcaa |
26153251 |
T |
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