View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_22 (Length: 488)
Name: NF12942_low_22
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 66 - 481
Target Start/End: Original strand, 27362361 - 27362782
Alignment:
| Q |
66 |
ttctaggtgcatttccataa-ttaattttgactgagaaagctttatgaagcacaaaatcaacaatttatagtgtttaatttgcagcacacttggagttat |
164 |
Q |
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| T |
27362361 |
ttctaggtgcatttccataaattaattttgactgagaaagctttatgaagcacaaaatcaacaattga-agtgttt-----gcagcacacttggagttat |
27362454 |
T |
|
| Q |
165 |
tacctatcatggcagttcctaagatgatgagattaatagctgat-----------cttcttgctattaaatctcaagtgattcctgctgataagatcaca |
253 |
Q |
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| T |
27362455 |
tacctatcatggcagttcctaagatgatgagattaatagctgatctgaagttgatcttcttgctattaaatctcaagtgattcctgctgataagatcaca |
27362554 |
T |
|
| Q |
254 |
attttgcaaagagccaatttctctgactaagctgaatgacttcctgaattgatggagccttgtgttattttacgtaccaatgacaaatatttatcccttg |
353 |
Q |
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| T |
27362555 |
attttgcaaagagccaatttctctgactaagctgaatgacttcctgaattgatggagccttgtg-tattttacgtaccaatgacaaatatttatcccttg |
27362653 |
T |
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| Q |
354 |
-nnnnnnnnncctttctatttatcaatgaaaaatatttatctcatgtttatttttatgcttcaatgataaatatttatcttatgatcgtgtttctttttc |
452 |
Q |
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| T |
27362654 |
ttttttttttcctttctatttatcaatgaaaaatatttatctcatgtttatttttatgcttaaatgacaaatatttatcttatgatcgtgtttctttttc |
27362753 |
T |
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| Q |
453 |
atatttattggtgataaatatgtgtctca |
481 |
Q |
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| T |
27362754 |
atatttattggtgataaatatgtgtctca |
27362782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 104 - 481
Target Start/End: Complemental strand, 45401340 - 45400948
Alignment:
| Q |
104 |
gctttatgaagcacaaaatcaacaatttatagtgtttaatttgcagcacacttggagttattacctatcatggcagttcctaagatgatgagattaata- |
202 |
Q |
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| T |
45401340 |
gctttatgaagcacaaaatcaacaattga-agtgtttaatttgcagcacacttggagttattacctatcatggcagttcctaagatgatgagattaatat |
45401242 |
T |
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| Q |
203 |
------------gctgatcttcttgctattaaatctcaagtgattcctgctgataagatcacaattttgcaaagagccaatttctctgactaagctgaat |
290 |
Q |
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| T |
45401241 |
aactgatctgaagttgatctccttgctattaaatctcaagtgattcctgttgataagatcacaattttgcaaagagccaatttctctgactaagctgaat |
45401142 |
T |
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| Q |
291 |
gacttcctgaattgatggagccttgtgttattttacgtaccaatgacaaatatttatcccttgnnnnnnnnncctttctatttatcaatgaaaaatat-- |
388 |
Q |
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| T |
45401141 |
gacttcctgaattgatggagccttgtgttattttacgtaccaatgacaaatatttatcccttgtttttttttcctttctatttatcaatgaaaaatattt |
45401042 |
T |
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| Q |
389 |
-ttatctcatgtttatttttatgcttcaatgataaatatttatcttatgatcgtgtttctttttcatatttattggtgataaatatgtgtctca |
481 |
Q |
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| T |
45401041 |
attatctcatgtttatttttatgcttcaatgacaaatatttatcttatgatcgtgtttctttttcatatttattggtgataaatatgtgtctca |
45400948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 45404923 - 45404829
Alignment:
| Q |
13 |
aatattacacttgatccaaatgaaccttgggggctgccaaataacctccttaattctaggtgcatttccataattaattttgactgagaaagctt |
107 |
Q |
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| T |
45404923 |
aatattacacttgatccaaatgaacattgggggctgccaaataacctccttaattctaggtgcatttccataattaattttgactgagaaagctt |
45404829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 14810933 - 14810863
Alignment:
| Q |
44 |
ggctgccaaataacctccttaattctaggtgcatttccataattaattttgactgagaaagctttatgaag |
114 |
Q |
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| T |
14810933 |
ggctgccaaataacctccttaattttaggagcaatgccatagttaatcttgacagaaaatgctttaagaag |
14810863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 14002390 - 14002437
Alignment:
| Q |
163 |
attacctatcatggcagttcctaagatgatgagattaatagctgatct |
210 |
Q |
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| T |
14002390 |
attacctatcatagcagttcctaagataatgagattgatagctgatct |
14002437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 8484201 - 8484237
Alignment:
| Q |
365 |
tttctatttatcaatgaaaaatatttatctcatgttt |
401 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |
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| T |
8484201 |
tttctatttagcaatgacaaatatttatctcatgttt |
8484237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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