View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_23 (Length: 475)
Name: NF12942_low_23
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_23 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Original strand, 28283328 - 28283786
Alignment:
| Q |
17 |
aaataccatggcaaggccacatacaggagaactagaagaaccttgcctttttaatctcatgtatcctttctcaccccagtcatcaccataggaattctta |
116 |
Q |
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| T |
28283328 |
aaataccatggcaaggccacatacaggagaactagaagaaccttgcctttttaatctcatgtatcctttctcaccccagtcatcaccataggaattctta |
28283427 |
T |
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| Q |
117 |
atcaaccaatacttatttctccggctccctccataaccaattaaggtgacagcatgagaaaaattgagcgactccttcggtccacatggtccgctaccaa |
216 |
Q |
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| T |
28283428 |
atcaaccaatacttatttctgcggctccctccataaccaattaaggtgactgcatgagaaaaattgagcgactccttcggtccacatggtccgctaccaa |
28283527 |
T |
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| Q |
217 |
atattccactttcatatttcttgaagtcatcgttaatcgcgattgcaactgtaaccggctgttctgccactgcttctaataggttttgttcgccgggtga |
316 |
Q |
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| T |
28283528 |
atattccactttcatatttcttgaagtcatcgttaatcgcgattgcaactgtaaccggctgttgtgccactgcttctaataggttttgttcgccgggtga |
28283627 |
T |
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| Q |
317 |
tactattacataaccatcaatttttgcagcacggtcttttctgttgctaaggcatgtacccactttttctgtgtaaggataatccacatcttttgctatt |
416 |
Q |
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| T |
28283628 |
tactattacataaccatcaattttcgcagcacggtcttttttgttgctaaggcatgtacccactttttctgtgtaaggataatccacatcttttgctatt |
28283727 |
T |
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| Q |
417 |
ccattggtcttcatatactctaaagcttttcgtacgctacctccttcgcatccaccatt |
475 |
Q |
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| T |
28283728 |
ccattggtcttcatatactctaaagcttttcgtacgctacctccttcgcatccaccatt |
28283786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 27349608 - 27349531
Alignment:
| Q |
50 |
agaagaaccttgcctttttaatctcatgtatcctttctcaccccagtcatcaccataggaattcttaatcaaccaata |
127 |
Q |
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| T |
27349608 |
agaagaaccttgccttttcaatttcatgtatccggtctcaccccaacctgtaccataagaattcttaatcaaccaata |
27349531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 28004733 - 28004703
Alignment:
| Q |
193 |
tcggtccacatggtccgctaccaaatattcc |
223 |
Q |
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| T |
28004733 |
tcggtccacatggtccgctaccaaatattcc |
28004703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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