View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_27 (Length: 448)
Name: NF12942_low_27
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 47620020 - 47619607
Alignment:
| Q |
20 |
ttactaattaatcatcaaaattcataattaatattatgagtagcgaggaaatagtgttacagggaggaggagtctgcgaaaacgagttttcagatcaaga |
119 |
Q |
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| T |
47620020 |
ttactaattaatcatcaaaattcataattaatattatgagtagcgaggaaatagtgttacagggaggaggagtctgcgaaaacgagttttcagatcagga |
47619921 |
T |
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| Q |
120 |
ggaagagttgcaacaggaacattctgatcagaaggccgaggcattggcgtttaagaaaaggaaacgtctaacaaagcaactatcaatgtgtggaacacca |
219 |
Q |
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| T |
47619920 |
ggaagagttgcaacaggaacattctgatcagaaggccgaggcattggcgtttaagaaaaggaaacgtctaacaaagcaactatcaatgtgtggaacacca |
47619821 |
T |
|
| Q |
220 |
ggagacatggcgtgggaaagaaggcgtcgacaaactcaacgtaggaggaatagcatgcacgattgcaacgacgaagatctaaatgagcttagaggatgta |
319 |
Q |
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| T |
47619820 |
ggagacatggcgtgggaaagaaggcgtcgacaaactcaacgtaggaggaatagcatgcacgattgcaacgacgaagatctaaatgagcttagaggatgta |
47619721 |
T |
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| Q |
320 |
ttgaattaggatttggatttaatgaggaagatggacaaaagctttgcaatacattaccggctcttgatctatattttgccgttaaccggaacctgtctcc |
419 |
Q |
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| T |
47619720 |
ttgaattaggatttggatttaatgaggaagatggacaaaagctttgcaatacattaccggctcttgatctatattttgccgttaaccggaacctgtctcc |
47619621 |
T |
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| Q |
420 |
aagtccggtatcta |
433 |
Q |
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| T |
47619620 |
aagtccggtatcta |
47619607 |
T |
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