View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_28 (Length: 447)
Name: NF12942_low_28
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 6060060 - 6059639
Alignment:
| Q |
9 |
gagaagaagagaatggaggaaagaaaattggtgaaaaaacatagatctttgctgttgagtgaaaacaacattttttgcaaaatagtcctcagcattgtgg |
108 |
Q |
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| T |
6060060 |
gagaagaagagaatggaggaaagaaaattggtgaaaaaacatagatctttgctgttgagtgaaaacaacattttttgcaaaatagtcctcagcattgtgg |
6059961 |
T |
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| Q |
109 |
tggggaggagggctgtttgtacagtttgataggnnnnnnncctggtgttccttgcagctggtatgattcaatggtctggatcgaatgtgctggtgtgttg |
208 |
Q |
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| T |
6059960 |
tggggaggagggctgtttgtacagtttgataggtttttttcctggtgttccttgcagctggtatgattcaatggtctggatcgaatgtgctggtgtgttg |
6059861 |
T |
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| Q |
209 |
cggctttggaggagtttccatgcaggacttttcttgttatgttatgaagtgagacagatgatttacagcgttttctgtctttctgctgtatatattctgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6059860 |
cggctttggaggagtttccatgcaggacttttcttgttatgttatgaagtgagacagatgatttacagcgttttctgtctttctgctgcatatattctgt |
6059761 |
T |
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| Q |
309 |
tccattcttgtaacaagtcatggaagtagctttgtggtgtatcctggagatgcattgtgtgtctggttaaattaatgtctgtattggcatctctctttgg |
408 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6059760 |
tccattcttgtaacaagtcctggaagtagctttgtggtgtatcctggagatgcattgtgtgtctggttaaattaatgtctgtattggcatctctctttgg |
6059661 |
T |
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| Q |
409 |
tgtgctttggccgtgtagttaat |
431 |
Q |
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| T |
6059660 |
t-tgctttggccgtgtagttaat |
6059639 |
T |
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