View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_29 (Length: 432)
Name: NF12942_low_29
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_29 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 40411147 - 40411581
Alignment:
| Q |
1 |
tagcttttaacataaaagcaatttttatggactatactactaatagtttaatttaatctcccaaaatgaagggcatgtttatttt---ttgagggagaag |
97 |
Q |
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| T |
40411147 |
tagcttttaacataaaagcaatttttatggactatactactaatagtttaatttaatctcccaaaatgaagggcatgtttatttttttttgagggagaag |
40411246 |
T |
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| Q |
98 |
ggcgtgtttattatacagaataaatatatcaaataaaattaaagaattcaacaaagggagaaaaacatgaagataattaattgagtacctgagaggccaa |
197 |
Q |
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| T |
40411247 |
ggcatgtttattatacagaataaatatatcaaataaaattaaagaaatcaacaaagggagaaaaacatgaaaataattaattgagtacctgagaggccaa |
40411346 |
T |
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| Q |
198 |
tgaaagatcacctaataattgtttctttttattctcctctaagcagaaataagagtacaaaaccattccaaaaatagcaatcaatattccaataatgttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40411347 |
tgaaagatcacctaataattgtttctttttattctcctctaagcagaaataagagtacaaaaccattccaaaaatagcaatcaatattccaataatgttc |
40411446 |
T |
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| Q |
298 |
cttccattgaaggggtcatggagcaatgtgtagccaaagcctataacaaggcatgttttgaggtggcctagtacttgataagttacaggagatgctttgc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
40411447 |
cttccattgaaggggtcatggagcaatgtgtagccaaagcctataacaaggcatgttttgaggtggcctagtacttgataagttacaggtgatgttttgc |
40411546 |
T |
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| Q |
398 |
caataactagaaacgtgccgaagttcacagaaaca |
432 |
Q |
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| T |
40411547 |
caataactagaaacgtgctgaagttcacagaaaca |
40411581 |
T |
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Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 240 - 432
Target Start/End: Complemental strand, 21684188 - 21683996
Alignment:
| Q |
240 |
gcagaaataagagtacaaaaccattccaaaaatagcaatcaatattccaataatgttccttccattgaaggggtcatggagcaatgtgtagccaaagcct |
339 |
Q |
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||||||||| || |||||| |||||||||| | || | | ||||||||||||||||||| || |||| || ||||||||||||||||||||||| ||| |
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| T |
21684188 |
gcagaaataggaatacaaacccattccaaacactgctactagtattccaataatgttcctttcagtgaaaggatcatggagcaatgtgtagccaaatcct |
21684089 |
T |
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| Q |
340 |
ataacaaggcatgttttgaggtggcctagtacttgataagttacaggagatgctttgccaataactagaaacgtgccgaagttcacagaaaca |
432 |
Q |
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| T |
21684088 |
agaacaagacaagtcttgaggtggcccaacacttgatacgttactggagatgtttttcctattactagaaaagtgctaaagttcacagaaaca |
21683996 |
T |
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