View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_31 (Length: 420)
Name: NF12942_low_31
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_31 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 31 - 420
Target Start/End: Complemental strand, 48833679 - 48833289
Alignment:
| Q |
31 |
tgtaaacttgtaagtcataagtttatatttctattttgaacatttttt--caaatttttcatgttcaaataatatcattctaaatgtaaatacatgccac |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48833679 |
tgtaaacttgtaagtcataagtttatatttctattttgaacattttttttcaaatttttcatgttcaaataatatcattctaaatgtaaatatatgccac |
48833580 |
T |
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| Q |
129 |
caaaatgtactaggaaatgaacattacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtc |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833579 |
caaa-tgtactaggaaatgaacattacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtc |
48833481 |
T |
|
| Q |
229 |
caaatggtgggttttgttttgaaacctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagacc |
328 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48833480 |
caaatggtgggttttgttttgaaacctgatattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcatacgacc |
48833381 |
T |
|
| Q |
329 |
aagatcaacaacaattcttaatccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttc |
420 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833380 |
aagatcaacaacaattgttaatccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttc |
48833289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 153 - 419
Target Start/End: Original strand, 48791837 - 48792103
Alignment:
| Q |
153 |
tacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaaa |
252 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
48791837 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
48791936 |
T |
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| Q |
253 |
cctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatcc |
352 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||| ||||||| |
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| T |
48791937 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
48792036 |
T |
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| Q |
353 |
actaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtcctt |
419 |
Q |
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|||||||||||||||||| ||||| ||| | ||||||||||||| ||||||| |||||||||||| |
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| T |
48792037 |
actaataggcctcacatatatattaacactgttttctttcataaaacagtcaactctcacagtcctt |
48792103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 152 - 419
Target Start/End: Original strand, 15827308 - 15827575
Alignment:
| Q |
152 |
ttacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaa |
251 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
15827308 |
ttacctaacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgttttgaa |
15827407 |
T |
|
| Q |
252 |
acctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatc |
351 |
Q |
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||| |||||||||||||||||| ||||||||| ||||| ||| || |||||||| |||||||||||||| || ||||||||| |||| ||| |||||| |
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| T |
15827408 |
gccttatattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcatgagtccaagatcagcaaccattgttaatc |
15827507 |
T |
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| Q |
352 |
cactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtcctt |
419 |
Q |
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||||||||||||||||| ||| ||| ||||| ||||||||||||| || |||| |||||||||||| |
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| T |
15827508 |
cactaataggcctcacaaaaaaattaacagtgttttctttcataaaacaatcaactctcacagtcctt |
15827575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 151 - 420
Target Start/End: Original strand, 48817383 - 48817652
Alignment:
| Q |
151 |
attacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttga |
250 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48817383 |
attacctaacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgttttggtccaaatggtggactttgttttga |
48817482 |
T |
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| Q |
251 |
aacctgatattcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaat |
350 |
Q |
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|||| || ||||| |||||||| |||||||| | ||||| || || ||||| ||||||||||||||||| |||| ||||||| | || || | | | |
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| T |
48817483 |
aaccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgatt |
48817582 |
T |
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| Q |
351 |
ccactaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtccttc |
420 |
Q |
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||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
48817583 |
ccagtaataggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagtccttc |
48817652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 259 - 418
Target Start/End: Complemental strand, 40845799 - 40845640
Alignment:
| Q |
259 |
attcagtgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcataagaccaagatcaacaacaattcttaatccactaat |
358 |
Q |
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|||| ||||||||| | |||||||||| |||||| | || ||||||||||||||||| |||||||| ||||||||||||||||| | | |||| |||| |
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| T |
40845799 |
attctgtgttctcatccgtaggcacagcttcaataactctatcatgatactcaacaatcttcataagttcaagatcaacaacaattttaattccagtaat |
40845700 |
T |
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| Q |
359 |
aggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagtcct |
418 |
Q |
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|||||| ||||| ||||| |||| |||||||||| |||||||| | |||||||||||| |
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| T |
40845699 |
aggcctaacatatatattggcagtgttttctttcattaagcagtctaacctcacagtcct |
40845640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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