View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_33 (Length: 418)
Name: NF12942_low_33
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 41722541 - 41722926
Alignment:
| Q |
14 |
aggagcagagagcgatatgatttcatttatttcttattcaagtcactttcaaattagttgagttgatgctccaaattagctaccacgtctttcatgaaaa |
113 |
Q |
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| T |
41722541 |
aggaacagagagcgatatgatttcatttatttcttattcaagtcactttcaaattagttgagttgatgctccaaattagctaccacgtctttcatgaaaa |
41722640 |
T |
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| Q |
114 |
agggatgaggtgaagagctctttttcactatttcacaacaaaaatgggttaaaatgtaaaattgtgacactttcaagccaatgatatccaatttaaaaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
41722641 |
agggatgaggtgaagagctctttttcactatttcacaacaaaaatgggttaaaatgtaaaactgtgacactttcaagccaatgatatccattttaaaaat |
41722740 |
T |
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| Q |
214 |
aaagctaatattgcataatcaagagttatcatttttcaataatagttgatgttggaagacaatacgtgtagatgacctacctataaaatcacagtgcccc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41722741 |
aaagctaatattgcataatcaagagttatcatttttcaataatagttgatgttggaagacaatacgtgtatatgacctacctataaaatcacagtgcccc |
41722840 |
T |
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| Q |
314 |
aaaagtgtaggtgcattcaccaaaaattgcctaaggcagtggtaatggcaagctagtagtcacattccattccgccaccaaattgg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41722841 |
aaaagtgtaggtgcattcaccaaaaattgcctaaggtagtggtaatggcaagctagtagtcacattccattccgccaccaaattgg |
41722926 |
T |
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