View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_34 (Length: 409)
Name: NF12942_low_34
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 37579854 - 37580239
Alignment:
| Q |
15 |
catgccatcgtggttaataacaatcaataaagatcaagcaggaaaaattgcaggataaactttactgttacattgcagaatctgccaccgaattgatcag |
114 |
Q |
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| T |
37579854 |
catgccatcgtggttaataacaatcaataaagatcaagcaggaaaaattgcaggataaactttactgttacattgcagaatctgccaccgaattgatcag |
37579953 |
T |
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| Q |
115 |
cttataatagcatgcttagctgttatgcaagcaccatatattgtgaagtccatggaagcatatgaaaaccacctaacagggatatctctgatagatctgc |
214 |
Q |
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| T |
37579954 |
cttataatagcatgcttagctattatgcaagcaccatatatcgtgaagtccatggaagcatatgaaaaccacctaacagggatatctctgatagatctgc |
37580053 |
T |
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| Q |
215 |
taaagtatatagactgtccaatccaaaattcactataagaatctatcaatttttaaagcaacctgaccaaattcccttgatttgcaattataagctgatc |
314 |
Q |
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| T |
37580054 |
taaagtatatagactgtccaatccaaaattcactataagaatctatcaatttttaaagcaacctgaccaaattcccttgatttgcaattataagctgatc |
37580153 |
T |
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| Q |
315 |
aattgtgttgggagacataaagtagctgtatctgaggttgaatccaaatagtgccatgtcaacatcatctttagcaacctgatgat |
400 |
Q |
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| T |
37580154 |
aattgtgttgggagacataaagtagctgtatctgaggttgaatccaaatagtgccatgtcaacatcatctttagcaacctgatgat |
37580239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 37528737 - 37528815
Alignment:
| Q |
251 |
aagaatctatcaatttttaaagcaacctgaccaaattcccttgatttgcaattataagctgatcaattgtgttgggaga |
329 |
Q |
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| T |
37528737 |
aagaatctaccaatttttaaagcaacctcaacaaattcccattatttgcaattataagctgatcaattgttttgggaga |
37528815 |
T |
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