View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_41 (Length: 380)
Name: NF12942_low_41
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 42325107 - 42324876
Alignment:
| Q |
20 |
ggtgtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtacc |
119 |
Q |
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| T |
42325107 |
ggtgtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtacc |
42325008 |
T |
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| Q |
120 |
atatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctaca |
219 |
Q |
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| T |
42325007 |
atatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctaca |
42324908 |
T |
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| Q |
220 |
tttggtaggtattttaatggttgaaaaatgcc |
251 |
Q |
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| T |
42324907 |
tttggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 269 - 368
Target Start/End: Complemental strand, 42324848 - 42324749
Alignment:
| Q |
269 |
gatgagagagaatataatgacatattgaaattgtaaaacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
368 |
Q |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
42324749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
42 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
91 |
Q |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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