View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_43 (Length: 357)
Name: NF12942_low_43
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 2466796 - 2467125
Alignment:
| Q |
11 |
cagagagaaaaacatttgataaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaagtgatgagtaacaatcttcataagc |
110 |
Q |
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| T |
2466796 |
cagagagaaaaacatttgataaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaagtgatgagtaacaatcttcataagc |
2466895 |
T |
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| Q |
111 |
tattggaagacgatgctccggtgctaaccggtaatcaacagagagaataatggactgtgacgcgacggagaaatctccgaggaagttgttgtaaccaagc |
210 |
Q |
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| T |
2466896 |
tattggaagacgattctccggtgctaaccggtaatcaacagagagaataatggactgtgacgcgacggagaaatctccgaggaagttgttgtaaccaagc |
2466995 |
T |
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| Q |
211 |
catgttgtggaaccaatgcaaaagccaccaccatggaaataaactaagagaggtaggagttttttggttggattgtttggaatgaagattcttcctgtga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466996 |
catgttgtggaaccaatgcaaaagccaccaccatggaaataaactaagagaggtaggagttttttggttggattgtttggaatgaagattcttcctgtga |
2467095 |
T |
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| Q |
311 |
tgggttttgtagggtcaatgattacgtctt |
340 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
2467096 |
tgggttttgtagggtcaatgattatgtctt |
2467125 |
T |
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