View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_46 (Length: 331)

Name: NF12942_low_46
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_46
NF12942_low_46
[»] chr6 (2 HSPs)
chr6 (71-321)||(1441716-1441966)
chr6 (128-186)||(7564521-7564579)
[»] chr5 (2 HSPs)
chr5 (27-76)||(30085729-30085778)
chr5 (26-71)||(4944574-4944619)
[»] chr3 (5 HSPs)
chr3 (27-71)||(32279207-32279251)
chr3 (27-71)||(25046216-25046260)
chr3 (27-71)||(42028564-42028608)
chr3 (27-77)||(27012020-27012070)
chr3 (27-84)||(39439187-39439244)
[»] chr7 (2 HSPs)
chr7 (27-78)||(19626259-19626310)
chr7 (34-71)||(12634216-12634253)
[»] chr4 (4 HSPs)
chr4 (27-74)||(13780088-13780135)
chr4 (27-74)||(35033111-35033158)
chr4 (27-74)||(35292797-35292844)
chr4 (34-71)||(41809131-41809168)
[»] chr2 (1 HSPs)
chr2 (25-72)||(28198454-28198501)
[»] chr1 (5 HSPs)
chr1 (27-73)||(42366707-42366753)
chr1 (32-73)||(8102054-8102095)
chr1 (29-76)||(41404965-41405012)
chr1 (29-70)||(15582406-15582447)
chr1 (29-69)||(49765670-49765710)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 71 - 321
Target Start/End: Complemental strand, 1441966 - 1441716
Alignment:
Q  71 taaagattcataatattcaaggcctcccttcttctccgttacccattaatgtcctcacctctaacatctacgttgagagtcttgtatcaccatgacttac 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1441966 taaagattcataatattcaaggcctcccttcttctccgttacccattaatgtcctcacctctaacatctacgttgagagtcttgtatcaccatgacttac 1441867  T
Q  171 atgctttgctatgttgcctctcgaatattttactcatgtgttttcgtttgttatgtcatttattgtttctattgttaggtgctgaatttatagattcatg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1441866 atgctttgctatgttgcctctcgaatattttactcatgtgttttcgtttgttatgtcatttattgtttctattgttaggtgctgaatttatagattcatg 1441767  T
Q  271 ttaattcatgatcaatattatattaactctttatttcactattttgatgat 321  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  1441766 ttaattcatgatcaatataatattaactctttatttcactatttcgatgat 1441716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 7564579 - 7564521
Alignment:
Q  128 cctctaacatctacgttgagagtcttgtatcaccatgacttacatgctttgctatgttg 186  Q
    |||||||  |||| ||||||||||| |||||||| |||| |||| ||||||||||||||    
T  7564579 cctctaatgtctatgttgagagtctcgtatcaccttgacctacacgctttgctatgttg 7564521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 30085729 - 30085778
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaaga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30085729 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaaga 30085778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 4944574 - 4944619
Alignment:
Q  26 tcattccgttccgctccgttagtttcatgttatccaaacagagcct 71  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  4944574 tcattccgttccgctccgttagttttaggttatccaaacagagcct 4944619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 32279207 - 32279251
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcct 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32279207 cattccgttccgctccgttagtttcatgttatccaaacagagcct 32279251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 25046216 - 25046260
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcct 71  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  25046216 cattctgttccgctccgttagtttcatgttatccaaacagagcct 25046260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 42028608 - 42028564
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcct 71  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  42028608 cattcggttccgctccgttagttttaggttatccaaacagagcct 42028564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 27012020 - 27012070
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaagat 77  Q
    |||||| ||||||||||||||||| | |||||| ||| |||||||||||||    
T  27012020 cattcctttccgctccgttagttttaagttatctaaatagagcctaaagat 27012070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 39439244 - 39439187
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaagattcataat 84  Q
    |||||| ||||||||||||||||| |  ||||||||||||| ||| ||| ||||||||    
T  39439244 cattccattccgctccgttagttttagattatccaaacagaaccttaagtttcataat 39439187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 19626259 - 19626310
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaagatt 78  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  19626259 cattccgttccgctccgttagtttcatgctatccaaacagagcctatagatt 19626310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 12634216 - 12634253
Alignment:
Q  34 ttccgctccgttagtttcatgttatccaaacagagcct 71  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  12634216 ttccgctccgttagttttaagttatccaaacagagcct 12634253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 13780088 - 13780135
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaa 74  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13780088 cattccgttccactccgttagtttcatgttatccaaacagagcctaaa 13780135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 35033158 - 35033111
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaa 74  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35033158 cattccgttccgctccgttagtttcttgttatccaaacagagcctaaa 35033111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 35292797 - 35292844
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaaa 74  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||    
T  35292797 cattccgttccgctccgttagttttagattatccaaacagagcctaaa 35292844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 41809168 - 41809131
Alignment:
Q  34 ttccgctccgttagtttcatgttatccaaacagagcct 71  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  41809168 ttccgctccgttagttttaagttatccaaacagagcct 41809131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 28198501 - 28198454
Alignment:
Q  25 ttcattccgttccgctccgttagtttcatgttatccaaacagagccta 72  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  28198501 ttcattccgttccgctctgttagtttcatgttatccaaagagagccta 28198454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 42366707 - 42366753
Alignment:
Q  27 cattccgttccgctccgttagtttcatgttatccaaacagagcctaa 73  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||||    
T  42366707 cattcctttccgctccgttagttttaagttatccaaacagagcctaa 42366753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 8102095 - 8102054
Alignment:
Q  32 cgttccgctccgttagtttcatgttatccaaacagagcctaa 73  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  8102095 cgttccgctccgttagttttatattatccaaacagagcctaa 8102054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 41404965 - 41405012
Alignment:
Q  29 ttccgttccgctccgttagtttcatgttatccaaacagagcctaaaga 76  Q
    |||| ||||||||||||||||| | ||||||||||||||||| |||||    
T  41404965 ttccattccgctccgttagttttaagttatccaaacagagccaaaaga 41405012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 15582406 - 15582447
Alignment:
Q  29 ttccgttccgctccgttagtttcatgttatccaaacagagcc 70  Q
    |||||||||||||||||||||| | ||| |||||||||||||    
T  15582406 ttccgttccgctccgttagttttaagttttccaaacagagcc 15582447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 49765670 - 49765710
Alignment:
Q  29 ttccgttccgctccgttagtttcatgttatccaaacagagc 69  Q
    |||| |||||||||||||||||||  |||||||||||||||    
T  49765670 ttccattccgctccgttagtttcagtttatccaaacagagc 49765710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University