View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_47 (Length: 326)
Name: NF12942_low_47
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 53278483 - 53278789
Alignment:
| Q |
7 |
ccaactgataatgccgcgagattttataaatggttcgaggtaagattgatatagattatgtagtttctttgatattgggtgtgagattattagtgttggg |
106 |
Q |
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| T |
53278483 |
ccaactgataatgccgcgagattttataaatggttcgaggtaagattgatatagattatgtagtttctttgatattgggtgtgagattattagtgttggg |
53278582 |
T |
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| Q |
107 |
tttgtatatttattgcgtgattgtgattttgatttcaggaatttgaaggggaagaagattcgtttaagaatcttcagtatggtgtgtttggacttgggaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53278583 |
tttgtatatttattgcgtgattgtgattttgatttcaggaatttgaaggggaagaagattcgtttaagaatcttcagtatggtgtgtttggacttgggaa |
53278682 |
T |
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| Q |
207 |
cagacagtatgagcattttaataaggtttgcactcaagcccttatgcattcttgtggttttctaagctttgactatggtgatggtgttgctagtttccgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53278683 |
cagacagtatgagcattttaataaggtttgcactcaagcccttatgcattcttgtggttttctaagctttgactatagtgatggtgttgctagtttccgt |
53278782 |
T |
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| Q |
307 |
gctttct |
313 |
Q |
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||||||| |
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| T |
53278783 |
gctttct |
53278789 |
T |
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