View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_48 (Length: 325)

Name: NF12942_low_48
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_48
NF12942_low_48
[»] chr7 (13 HSPs)
chr7 (103-302)||(45175519-45175718)
chr7 (16-96)||(48506047-48506127)
chr7 (16-96)||(7444195-7444275)
chr7 (16-96)||(42071898-42071978)
chr7 (16-96)||(43052687-43052767)
chr7 (16-96)||(45174995-45175075)
chr7 (16-96)||(388793-388872)
chr7 (16-96)||(3930975-3931055)
chr7 (16-96)||(5795186-5795266)
chr7 (16-96)||(15434049-15434129)
chr7 (16-96)||(36926805-36926884)
chr7 (31-96)||(37334099-37334164)
chr7 (43-96)||(26216106-26216159)
[»] chr5 (5 HSPs)
chr5 (16-96)||(29327834-29327914)
chr5 (16-96)||(18879995-18880075)
chr5 (16-96)||(27905898-27905978)
chr5 (16-92)||(22921851-22921927)
chr5 (40-96)||(3805071-3805127)
[»] chr6 (4 HSPs)
chr6 (103-155)||(75001-75053)
chr6 (17-96)||(8200444-8200523)
chr6 (16-96)||(10346522-10346602)
chr6 (18-96)||(7957445-7957523)
[»] chr4 (7 HSPs)
chr4 (16-96)||(45674645-45674725)
chr4 (16-96)||(53369489-53369569)
chr4 (16-96)||(12789811-12789891)
chr4 (16-96)||(19850530-19850610)
chr4 (20-96)||(44791493-44791569)
chr4 (16-96)||(49820785-49820865)
chr4 (40-96)||(49378112-49378168)
[»] chr3 (4 HSPs)
chr3 (16-96)||(41609688-41609768)
chr3 (16-96)||(32688979-32689059)
chr3 (16-96)||(39134161-39134241)
chr3 (20-96)||(23206567-23206643)
[»] chr2 (7 HSPs)
chr2 (16-96)||(41958944-41959024)
chr2 (16-96)||(26436176-26436256)
chr2 (16-96)||(27633541-27633621)
chr2 (16-96)||(34064515-34064595)
chr2 (16-96)||(36538457-36538537)
chr2 (16-65)||(20986465-20986514)
chr2 (31-96)||(33831252-33831317)
[»] chr1 (4 HSPs)
chr1 (16-96)||(37441445-37441525)
chr1 (16-96)||(47603121-47603201)
chr1 (16-96)||(36418902-36418982)
chr1 (16-94)||(35309413-35309491)
[»] scaffold0316 (1 HSPs)
scaffold0316 (20-96)||(19101-19177)
[»] chr8 (2 HSPs)
chr8 (16-96)||(453291-453373)
chr8 (31-96)||(11161397-11161462)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 45175519 - 45175718
Alignment:
Q  103 gataaatcaagtctaatgatataccatttaaatataaatcttttttaatgataaaggtaactaattcccattgtatatataccctataaatcaattaaat 202  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45175519 gataaatcaagtctaatgatttcccatttaaatataaatcttttttaatgataaaggtaactaattcctattgtatatataccccataaatcaattaaat 45175618  T
Q  203 aagtagactaaatttaccagaaatctcatgaatttactatcactactttctggatttgcttttgcttgaaagaagacttcaaacaatcaatataggaaca 302  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45175619 aagtagactaaatttaccagaaatctcatgatttcattatcactactttatggatttgcttttgcttgaaagaagacttcaaataatcaatataggaaca 45175718  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 48506127 - 48506047
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||    
T  48506127 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgttcttcccttcaagacaaaattgta 48506047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 7444195 - 7444275
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||| |||||||  |||||||||||||||||| || ||||||||||||| ||| ||||| ||||| ||||||||    
T  7444195 attcaattagccgagaacataattcataatattcttctacttccaaactccaattgctctccccttaaagacaaaattgta 7444275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 42071898 - 42071978
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| ||||||||| |||||||| ||||||||    
T  42071898 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgttcttcctttcaagacaaaattgta 42071978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 43052687 - 43052767
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  43052687 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 43052767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 45174995 - 45175075
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||| ||||||||||||| |||||||||||||||||| ||  |||||||||||| ||| ||||| ||||| ||||||||    
T  45174995 attcaagtagctgagaacaaaattcataatattcttctacttctaaactccaattgctctcccctttaagacaaaattgta 45175075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 388793 - 388872
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || || |||||||||||| ||||||||    
T  388793 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctc-tcccttcaagacaaaattgta 388872  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 3931055 - 3930975
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| |  ||||||||||||||| ||||||||    
T  3931055 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactagtcttcccttcaagacaaaattgta 3930975  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 5795266 - 5795186
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || ||| || ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  5795266 attcaattagttgtgaataaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 5795186  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 15434049 - 15434129
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||| | || ||||||||||||||| ||||||||    
T  15434049 attcaattagttgtgaacaaaattcataatattcttttacttttaaactcccactgctcttcccttcaagacaaaattgta 15434129  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 36926805 - 36926884
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||| |||||||| |||||| ||||||||||| ||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  36926805 attctattagctgtgaacaaaattcataatat-cttttacttttaaactccaactgctcttcccttcaagacaaaattgta 36926884  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 37334099 - 37334164
Alignment:
Q  31 aacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||| ||||||||||||||| || ||  ||||||||| || ||||||||||||||| ||||||||    
T  37334099 aacaaaattcataatattcttttacttataaactccaactgctcttcccttcaagacaaaattgta 37334164  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 26216106 - 26216159
Alignment:
Q  43 aatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  26216106 aatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 26216159  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 29327834 - 29327914
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| |||||||||||| ||||||||||||||| ||||||||    
T  29327834 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaattgctcttcccttcaagacaaaattgta 29327914  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 18879995 - 18880075
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  18879995 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 18880075  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 27905898 - 27905978
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || ||||| ||||||||| ||||||||    
T  27905898 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttctcttcaagacaaaattgta 27905978  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 22921851 - 22921927
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaat 92  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||    
T  22921851 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaat 22921927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 3805127 - 3805071
Alignment:
Q  40 cataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||| ||||| || ||||||||||||| ||| ||||| ||||| ||||||||    
T  3805127 cataatatttttctacttccaaactccaattgctctccccttaaagacaaaattgta 3805071  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 75053 - 75001
Alignment:
Q  103 gataaatcaagtctaatgatataccatttaaatataaatcttttttaatgata 155  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  75053 gataaatcaagtctaatgatatcccatttaaatataaatcttttttaatgata 75001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 8200444 - 8200523
Alignment:
Q  17 ttcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  8200444 ttcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 8200523  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 10346522 - 10346602
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  10346522 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 10346602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 7957445 - 7957523
Alignment:
Q  18 tcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||| ||||||||  || ||||||||||||||| || ||||||||||||| ||| | ||| ||||| ||||||||    
T  7957445 tcaattagttgagaacagaatgcataatattcttctacttccaaactccaattgctctcctctttaagactaaattgta 7957523  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 45674645 - 45674725
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| |||||||||||| ||||||||||||||| ||||||||    
T  45674645 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaattgctcttcccttcaagacaaaattgta 45674725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 53369489 - 53369569
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || |||||| |||||||| ||||||||    
T  53369489 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcctttcaagacaaaattgta 53369569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 12789891 - 12789811
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || |||| |||||||||| ||||||||    
T  12789891 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctctttccttcaagacaaaattgta 12789811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 19850530 - 19850610
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||  ||||||||    
T  19850530 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagagaaaattgta 19850610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 44791569 - 44791493
Alignment:
Q  20 aattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  44791569 aattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 44791493  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 49820785 - 49820865
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||| ||| || ||||||||||||||| ||||||||    
T  49820785 attcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgta 49820865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 49378168 - 49378112
Alignment:
Q  40 cataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||    
T  49378168 cataatattcttctacttccaaactccaattgctcttcccttaaagacaaaattgta 49378112  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 41609688 - 41609768
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  41609688 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 41609768  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 32688979 - 32689059
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  32688979 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 32689059  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 39134161 - 39134241
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||| |||| ||||  |||||||||||||||||| || ||||||||||||| ||| | ||||||||||||||||||    
T  39134161 attcaattaactgataacataattcataatattcttctacttccaaactccaattgctctcctcttcaagacgaaattgta 39134241  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 23206643 - 23206567
Alignment:
Q  20 aattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||| |||||| ||||||||||||||| || ||| ||||||||| |||| || |||||||||| ||||||||    
T  23206643 aattagctgtgaacaaaattcataatattcttttacttttaaactccaactgttttttccttcaagacaaaattgta 23206567  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 41958944 - 41959024
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  41958944 attcaattagctgtgaacaaaattcataatattcttttaattttaaactccaactgctcttcccttcaagacaaaattgta 41959024  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 26436176 - 26436256
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| | ||||||| || ||||||||||||||| ||||||||    
T  26436176 attcaattagctgtgaacaaaattcataatattcttttacttttatactccaactgctcttcccttcaagacaaaattgta 26436256  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 27633541 - 27633621
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| |||||||||||| || || ||  |||||||||||||| ||||||||||||| ||||||||    
T  27633541 attcaattagctgtgaacaaaattcataatattattttacttctaaactccaattgttattcccttcaagacaaaattgta 27633621  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 34064515 - 34064595
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  34064515 attcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 34064595  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 36538457 - 36538537
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||||||  || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  36538457 attcaattaattgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 36538537  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 20986465 - 20986514
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactc 65  Q
    ||||||||||| |||||||  |||||||||||||||||| || |||||||    
T  20986465 attcaattagccgagaacataattcataatattcttctacttccaaactc 20986514  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 33831252 - 33831317
Alignment:
Q  31 aacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||| ||| ||||||||||| || ||| ||||||||| || |||||| |||||||| ||||||||    
T  33831252 aacaaaatttataatattcttttacttttaaactccaactgctcttccattcaagacaaaattgta 33831317  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 37441525 - 37441445
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  37441525 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 37441445  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 47603201 - 47603121
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  47603201 attcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 47603121  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 36418902 - 36418982
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||||||||||| |||||| |||||||||||| || || ||| ||||||||| || ||||||||||||||| ||||||||    
T  36418902 attcaattagctgtgaacaaaattcataatattattttacttttaaactccaactgctcttcccttcaagacaaaattgta 36418982  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 35309413 - 35309491
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattg 94  Q
    ||||||||||||| |||||| ||||||||||||||| || ||| ||||| ||| || ||||||||| ||||| ||||||    
T  35309413 attcaattagctgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttccctttaagacaaaattg 35309491  T

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Target: scaffold0316 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 19101 - 19177
Alignment:
Q  20 aattagctgagaacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    |||||| || |||||| ||||||||||||||| || ||| ||||||||| || ||||||||||||||| ||||||||    
T  19101 aattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgta 19177  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 453291 - 453373
Alignment:
Q  16 attcaattagctgagaacaagattcataatattcttctattttcaaactccaattg--ttcttcccttcaagacgaaattgta 96  Q
    |||||||||| |  |||||| ||||||||||||||| || ||| ||||||||| ||   ||||||||||||||| ||||||||    
T  453291 attcaattagttatgaacaaaattcataatattcttttacttttaaactccaactgctctcttcccttcaagacaaaattgta 453373  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 11161397 - 11161462
Alignment:
Q  31 aacaagattcataatattcttctattttcaaactccaattgttcttcccttcaagacgaaattgta 96  Q
    ||||| |||||||||||| || || ||| ||||| ||| || ||||||||||||||| ||||||||    
T  11161397 aacaaaattcataatattattttacttttaaacttcaactgctcttcccttcaagacaaaattgta 11161462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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