View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_49 (Length: 323)
Name: NF12942_low_49
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 40411752 - 40412045
Alignment:
| Q |
9 |
gaagaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggt |
108 |
Q |
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| T |
40411752 |
gaagaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggt |
40411851 |
T |
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| Q |
109 |
agagcaactgtgtggaagaaacattaagcgtcttttgtattgtgttggttagctaaattaagcactaagttaagaaatctaaatatatcaaattttcttc |
208 |
Q |
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| T |
40411852 |
agagcaactgtgtggaagaaacattaagcttcttttgtattgtgttggttagctaaattaatcaccaagttaagaaatctaa--atatcaaattttcttc |
40411949 |
T |
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| Q |
209 |
acctttaagccatcataactaattaacaacaataaatcacatagtagctatcataaaggatacaatttggctaacacatgttgttatgattgctag |
304 |
Q |
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| T |
40411950 |
acctttaagccatcatatctaattaacaacaataaatcacatagtagctattataaaggatacaatttggctaacacatgttgttatgattgctag |
40412045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 21683824 - 21683651
Alignment:
| Q |
11 |
agaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggtag |
110 |
Q |
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| T |
21683824 |
agaatatttgtatgcaaagacattttgcttggttagcatccgatcgacaagagggcctgaaacaaaaagaattgctgcttggaatggagcagactggtag |
21683725 |
T |
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| Q |
111 |
agcaactgtgtggaagaaacattaagcgtcttttgtattgtgttggttagctaaattaagcactaagttaagaa |
184 |
Q |
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| T |
21683724 |
agaagttgtgtggaagtgacattaagcttcttctgtattgtgttggtaagctgaattgttcaataagttaagaa |
21683651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 21683429 - 21683387
Alignment:
| Q |
262 |
taaaggatacaatttggctaacacatgttgttatgattgctag |
304 |
Q |
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| T |
21683429 |
taaaggatacaatttggccaacacatgttgttatgatagctag |
21683387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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