View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_5 (Length: 728)
Name: NF12942_low_5
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_5 |
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| [»] scaffold0019 (4 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 267 - 728
Target Start/End: Complemental strand, 178984 - 178523
Alignment:
| Q |
267 |
attcatcatgattaaacaagtaggttttgatagtcattatttaacttttcagccatgccaattacaaatagagaagcaaaagtgataactttataaggac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
178984 |
attcatcatgattaaacaagtaggttttgatagtcattctttaacttttcagccatgccaattacaaatagagaagcaaaagtgctaactttataaggac |
178885 |
T |
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| Q |
367 |
ttgatttgttataattatactagaatggtagtgtcatataattctatagttgcccgagtttccgaacaatggttattaattttctcaatgaccacttgct |
466 |
Q |
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| T |
178884 |
ttgatttgttataattatactagaatgttagtgtcatataattctatagttgctcgagtttcagaacaatggttattaattttctcaatgaccacttgct |
178785 |
T |
|
| Q |
467 |
ttttgtgttaagacatttgttttgtatcgcgtatgtggatcgaattcatagtaggaaatcaagtgagacctgatcactagatagcttggaggattattca |
566 |
Q |
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| T |
178784 |
ttttgtgttaagacatttgttttgtatcgcgtatgtggatcgaattcatagtaggaaatcaagtgagacctgatcactagatagcttggaggattattca |
178685 |
T |
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| Q |
567 |
atgattgttcaattaatatgtttcttctcctcacatcttgcttctatgtagtgaannnnnnnnnnnnnnnnnnncccttcgatttggcatggaaatgata |
666 |
Q |
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| T |
178684 |
atgattgttcaattaatatgtttcttctcctcacatcttgcttctatgtagtgaattttttttctttcttttttcccttcaatttggcatggaaatgata |
178585 |
T |
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| Q |
667 |
tgaaggtatcttactttttgacatagtggaagaatgaagtgtgtatcaaagttccttcccca |
728 |
Q |
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| T |
178584 |
tgaaggtatcttactttttgacatagtggaagaatgaagagtgtatcaaagttccttcccca |
178523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 267 - 728
Target Start/End: Complemental strand, 150126 - 149665
Alignment:
| Q |
267 |
attcatcatgattaaacaagtaggttttgatagtcattatttaacttttcagccatgccaattacaaatagagaagcaaaagtgataactttataaggac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
150126 |
attcatcatgattaaacaagtaggttttgatagtcattctttaacttttcagccatgccaattacaaatagaaaagcaaaagtgctaactttataaggac |
150027 |
T |
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| Q |
367 |
ttgatttgttataattatactagaatggtagtgtcatataattctatagttgcccgagtttccgaacaatggttattaattttctcaatgaccacttgct |
466 |
Q |
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| T |
150026 |
ttgatttgttataattatactagaatggtagtgtcatataattctatagttgcccgagtttcagaacaatggttattaattttctcaatgaccactttct |
149927 |
T |
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| Q |
467 |
ttttgtgttaagacatttgttttgtatcgcgtatgtggatcgaattcatagtaggaaatcaagtgagacctgatcactagatagcttggaggattattca |
566 |
Q |
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| T |
149926 |
ttttgtgttaagacatttgtgttgtattgcgtatgtggatcgaattcatagcaggaaatcaagtgagacctgatcactagatagcttggaggattatgca |
149827 |
T |
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| Q |
567 |
atgattgttcaattaatatgtttcttctcctcacatcttgcttctatgtagtgaannnnnnnnnnnnnnnnnnncccttcgatttggcatggaaatgata |
666 |
Q |
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| T |
149826 |
atgattgttctattaatatgtttcttctcctcacatcttgcttctatgtagtgaattttctttctttctgttttcccttcgatttggcatggaaatgata |
149727 |
T |
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| Q |
667 |
tgaaggtatcttactttttgacatagtggaagaatgaagtgtgtatcaaagttccttcccca |
728 |
Q |
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| T |
149726 |
tgaaggtatcttactttttgacatagtggaagaatgaagtgtgtatcaaagtttcttcccca |
149665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 179199 - 179028
Alignment:
| Q |
37 |
gtctggcccctgttttgcatagattgtagcggttgctgctacatttttgttccttcctggtgtgacatctgtttggttttccgtgtgttccccttcactg |
136 |
Q |
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| T |
179199 |
gtctggcccctgttttgcatagattgcagcggttgctgctacatttttgttccttcctggtgtggcatcggtttggtttttcgtgtgttccccttcactg |
179100 |
T |
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| Q |
137 |
tgttgtgtagtctgatggtgcggagctatgggaatgaaata---tgcctttaactagatttcaacgtcataa |
205 |
Q |
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| T |
179099 |
tgctgtgtagtctgatggtgcggagctatgggaatgaaatatggtgcctttaactagatttcaacgtcataa |
179028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 150359 - 150188
Alignment:
| Q |
37 |
gtctggcccctgttttgcatagattgtagcggttgctgctacatttttgttccttcctggtgtgacatctgtttggttttccgtgtgttccccttcactg |
136 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||| ||| |
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| T |
150359 |
gtctggcccctgttttgcatagattgcagtggttgctgctacatttttgttccttcctggtgtggcatcggtttggtttttcgtgtattccccttccctg |
150260 |
T |
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| Q |
137 |
tgttgtgtagtctgatggtgcggagctatgggaatgaaata---tgcctttaactagatttcaacgtcataa |
205 |
Q |
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| T |
150259 |
tgctgtgtagtctgatggtgtggagctatgggaatgaaatatggtgcctttaactagatttcaacgtcataa |
150188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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