View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_50 (Length: 323)
Name: NF12942_low_50
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 82 - 309
Target Start/End: Complemental strand, 34393576 - 34393349
Alignment:
| Q |
82 |
tacaaatacgaagttgaaatgcaaatccttatgatcctaagcatccattttagaacagcaattgtgtgatttgtgtacatctacaatctacacatcaact |
181 |
Q |
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|||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34393576 |
tacatatacaaagttgaaatgcaaatccttatgatcctaaacatccattttagatcagcaattgtgtgatttgtgtacatctacaatctacacatcaact |
34393477 |
T |
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| Q |
182 |
atccacttacagcagactacatttcacaactttacaccttcaaaccttcgtacactttcctttaccttagactgacattcacaggcaacccatttttcat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34393476 |
atccacttacagcagactacatttcacaactttacaccttcaaaccttcgtacactttcctttaccttagactgacattcacaggcaacccatttttcat |
34393377 |
T |
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| Q |
282 |
cctcaaagtcaaagacaaaacatgttca |
309 |
Q |
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| T |
34393376 |
cctcaaagtcaaagacaaaacatgttca |
34393349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 51742850 - 51742720
Alignment:
| Q |
30 |
aactatcagatcaagattaaactactaaattttcaattttggtaaattggattacaaatacgaagttgaaatgcaaatccttatgatcctaagcatccat |
129 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||| | ||| |
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| T |
51742850 |
aactatcagatcaaaattaaactacttaattttcaattttggtaaattggattaaaaatacaaagttgaaatgcaaatcgctatgatcttaaactaacat |
51742751 |
T |
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| Q |
130 |
tttagaacagcaattgtgtgatttgtgtaca |
160 |
Q |
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| T |
51742750 |
tttagatcagcaattgtatgatttgtgtaca |
51742720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 51742611 - 51742531
Alignment:
| Q |
216 |
caccttcaaaccttcgtacactttcctttaccttagactgacattcacaggcaacccatttttcatcctcaaagtcaaaga |
296 |
Q |
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| T |
51742611 |
caccttcaaacctttacacactttcccttaccttacactcacattcacatgcaacccatttttcatgctcaaagtcaaaga |
51742531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 51742648 - 51742610
Alignment:
| Q |
157 |
tacatctacaatctacacatcaactatccacttacagca |
195 |
Q |
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| T |
51742648 |
tacatctacaatctacacatcaactagccacttgcagca |
51742610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 11203196 - 11203118
Alignment:
| Q |
30 |
aactatcagatcaagattaaactactaaattttcaattttggtaaattggattacaaatacgaagttgaaatgcaaatc |
108 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
11203196 |
aactatcagatcaagattaaactacttaattttcaattttggtaaattggattaaaaatacaaagttgaaatgcaaatc |
11203118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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