View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_51 (Length: 321)
Name: NF12942_low_51
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 1028222 - 1028491
Alignment:
| Q |
20 |
tatctctcacagtaaattaacacttctataaatctttnnnnnnnttc-aaaaataataactttaggatgaccaaaaccaaaaatttgtatattttagaag |
118 |
Q |
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| T |
1028222 |
tatctctcacaataaattaacacttctataaatctttaaaaaaattcaaaaaataataattttaggatgaccaaaaccaaaagtttgtatattttagaag |
1028321 |
T |
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| Q |
119 |
gaccattatttatttaacgctttgaaaaaacaaaagattgtcccagaaattatacatatatcattactctttaaaattttggtcggaggtgtcaaagtac |
218 |
Q |
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| T |
1028322 |
gatcattatttatttaacgctttgaaaaaacaaaaggttatcctaaaaattatacatatatcattactctttaaaattttggtcggaggtgtcaaagtac |
1028421 |
T |
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| Q |
219 |
aagtttttccaagttctaagatgaatacatgtgcatatgttgtatttggtaaggagagcaaactattttattttagttcatacatga |
305 |
Q |
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| T |
1028422 |
-----------------aagatgaatacatgtgcatatgttgtatttggtaaggagagcaaactattttattttagttcatacatga |
1028491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1028162 - 1028217
Alignment:
| Q |
1 |
aatatttatttaatcctcttatctctcacagtaaattaacacttctataaatcttt |
56 |
Q |
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| T |
1028162 |
aatatttatttaatcctcttatctctcacaataaattaacacttcaataaatcttt |
1028217 |
T |
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