View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_52 (Length: 315)
Name: NF12942_low_52
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 33889469 - 33889756
Alignment:
| Q |
12 |
gaatatagtttgcagacctctaaattatgtttatgatttttggttaggtaaattcaagaaaaacatattcttcattacatttgcgaaaacaccaaagcta |
111 |
Q |
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| T |
33889469 |
gaatatggtttgcagacctctaaattatgtttatgatttttgattaggtaaattcaagaaaaacatgttcttcattacatttgcgaaaacaccaaagcta |
33889568 |
T |
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| Q |
112 |
aatgttatagtggagagactgtttaaacagaatagttacaaagttcctgattttcaaagcgaagaagacacgtttaaacaattggaacatctgatgaaag |
211 |
Q |
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| T |
33889569 |
aatgttatagtggagagactgtttaaacagactagttacaaagttcctgattttcaaagcgaagaagacacgtttaaccaattggaacatctgatgaaag |
33889668 |
T |
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| Q |
212 |
aaattgtgaagaaaggaccaatattgtttgtcctagacgatgtttggcaaggatcagaatcatttcttgacaattttgtgtttgatat |
299 |
Q |
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| T |
33889669 |
aaattgtgaagaaaggaccaatattgttggtcctagacgatgtttggcaaggatcagaatcatttcttgacaattttgtgtttgatat |
33889756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 52 - 296
Target Start/End: Original strand, 33867406 - 33867650
Alignment:
| Q |
52 |
tggttaggtaaattcaagaaaaacatattcttcattacatttgcgaaaacaccaaagctaaatgttatagtggagagactgtttaaacagaatagttaca |
151 |
Q |
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| T |
33867406 |
tggttaggtaaattcaatgaaaatattttcttcattacctttgcaaaaacaccaaagctgaatactatagtgcagaagctgtatcaacacactggttact |
33867505 |
T |
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| Q |
152 |
aagttcctgattttcaaagcgaagaagacacgtttaaacaattggaacatctgatgaaagaaattgtgaagaaaggaccaatattgtttgtcctagacga |
251 |
Q |
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| T |
33867506 |
atgttccggattttcaaaacgaagaagacacgtttaaccaattggaacatttgatgaaacaagttgtgaagaaaggaccaatattgttagtcctagacga |
33867605 |
T |
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| Q |
252 |
tgtttggcaaggatcagaatcatttcttgacaattttgtgtttga |
296 |
Q |
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| T |
33867606 |
tgtttggctagggtcagaatcacttgttgataattttgtgtttga |
33867650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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