View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_53 (Length: 311)
Name: NF12942_low_53
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 36740643 - 36740920
Alignment:
| Q |
20 |
atcatgacctcaaccacatattcagttctctaaattgtccaacttgtgcttgtatcaataataataataataggaaaggaaatggaagagagaaagtgta |
119 |
Q |
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| T |
36740643 |
atcatgacctcaaccacatattcagttctctaaattgtccaacttgtgcttgtatcaata---ataataataggaaaggaaatggaagagagaaagtata |
36740739 |
T |
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| Q |
120 |
ggaatatgcatgttctaatgattccatacccaagtcaaggtcacataaaccctatgcttcaattcagcaaacgcttgagcacaaaaggagttaaagtcac |
219 |
Q |
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| T |
36740740 |
gtaatatgcatgttctaatgattccatacccaagtcaaggtcacataaaccctatgcttcaattcagcaaacgcttgagcacaaaaggagttaaagtcac |
36740839 |
T |
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| Q |
220 |
aatggtcacaaccattttcatctccaaaaccatgcatctccaatcatcatccttaccttcctcccttcaatttgacttcat |
300 |
Q |
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| T |
36740840 |
aatggtcacaaccattttcatctccaaaaccatgcatctccaatcatcatccttaccttcctcccttcaatttgacttcat |
36740920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 13697451 - 13697402
Alignment:
| Q |
135 |
taatgattccatacccaagtcaaggtcacataaaccctatgcttcaattc |
184 |
Q |
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| T |
13697451 |
taatcattccatatccaacacaaggtcacataaacccaatgcttcaattc |
13697402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 13726455 - 13726426
Alignment:
| Q |
155 |
caaggtcacataaaccctatgcttcaattc |
184 |
Q |
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| T |
13726455 |
caaggtcacataaaccctatgcttcaattc |
13726426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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